Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7142g00001 ATGCCGCTTTTGAGGAGAAAGCCTTTTGCCCTTGCTGAACCACCGAATGATTTGGAGCCATGCGAGAGTCTTTTTCGAATTCGATTTACTAAAGAAGTATTTCGAGATTATAATGATTATTTGAACCGCTTAAATCAATACCGCAAGAGGGTTTGGACGTGCAAAGTAACGGGAAAAACCGGCTTGACTTATGAACAGGCTTTGGTGTCAGAGAAGCTTGCTACTGAGAAAGTTCAACAGATTCCGGAAGAATTAATGGTACCGGCACTTAGGATTATTCAGTACAGCATGCTCCCTTTGAAGGACCTTGTTGATTCTATTGCTGATAAGTTGAAGGAGCAGTTGGTTGAGGGCTCTCAATTGTATGGAAAAAAGAATGAAAGAGTGTGTCCTTGCAAAATATTGAGAGTGATGCAGAAAGATGCTGAAACTGTGAGCTATGTGGTGGCTTGGCTAGATGAAAGCAATAATGTTATTGAAAGAGCAGAAGTCAGTTCTCAAGATTTGGTGCAGAAGAAGCCACCTTTTAGTAGAAATATTTTGAAGTCTTTTGTCCGTGAATGTACATATCTAAATGCTCCTTGGGTTTTACATGATAAACTTGCAAAATATCATGGAATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAAGGTTTCCTTTAACAATGGACTCGTGGTCTTCACCAAAAAAAGAAAGCATGAGGAAGAGTCTATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCAGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTCATTGTGTAGGGGATCTCTTAACGGTTTGGGACTTTTTTATGTCTTTTGGTAAACTGTTACAATTATCACCGTACTCTCTCAAAGATTTTGAAAACGCAATCTGTCACAAGGATAGCAATGTTGTTCTCCTGGTGGAATCTCTTGCAGTACTCTTTCGTGTGCTCATCAAAGGTGATGATGAATACTATGCAGCTGTTCAAGATAAATTACCGAAGAAGATTACAATGATTAGTTGGAAAGACTATTTATGCAAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCAGCAGTATGAAGCAACAATTAAACGGGGACGTTATAGCTATGTAGATGTCAATGCTAAATTAGAAATCTTTTGCGAATTAGTCAATCGAGCCCTTGATACAGCTATTGTCAGGGAAAAATTGCATGAGTTTATTGAACAAAGGCGGGTACTGGGAGCTGCTAAAAGGGAAGAAGCAATTGAAGCTTCTGCAAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTCTGGAAGCACCTGTGGTGAGAATGGGCATGATCTTGATCAGGATGCAACTGTCTCAGCTGATAATAGTCACAGAATACAGAATGGTAGTATTAGAAAGAATAGAAACAGTGAGACAGAATCATCTACGCAAAAATATGCATTCGATAGTGGTATCAAGCATTCAAACCTTGCTTCAAAAATGTCAGCTGAAAAGTTTGATTCTGAGCTTAATCGATCTGCAGTATGCGGAAAAGTATACAATAGAAAGGAATCACAGAAACAACCAATAGGTGATAAGGATCAATCAGAGAAAAGCTACGAACAAAGGAGACAATATTTTGATCGGGAGATAGAGAAATGGTGTGTTCGTACAAGTTTCCTAGGTATGGACAGATATTATAATAGGTATTGGTGGTTTTACCGTGATGGAAGGATATTTGTTGAAAGTCCTGAATCCAATGAGTGGGGATACTACAGTAGCAAAGGAGAGCTTGATGGATTGACGAGTTCACTGAATTGCAAAGGCGAGAGGGAGAGGGCACTGCTAAAACAACTGAAAAAATATTATGGTAGAATATGCTCGGAATTGCAGAAAAATTCAAAGGATTTGTTGCATAAGACTACCCTGGATGATTCTATGGTCAGAAGGTCTACACGTGTTCGCGCACCACCTAGGAAAAATCCTGCCAAGGCTTTCCTTAGATATGTAAACAAGTGGAAAGAAGAGTAA 2037 0.3903 MPLLRRKPFALAEPPNDLEPCESLFRIRFTKEVFRDYNDYLNRLNQYRKRVWTCKVTGKTGLTYEQALVSEKLATEKVQQIPEELMVPALRIIQYSMLPLKDLVDSIADKLKEQLVEGSQLYGKKNERVCPCKILRVMQKDAETVSYVVAWLDESNNVIERAEVSSQDLVQKKPPFSRNILKSFVRECTYLNAPWVLHDKLAKYHGISTDIPEELRGKVSFNNGLVVFTKKRKHEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIHCVGDLLTVWDFFMSFGKLLQLSPYSLKDFENAICHKDSNVVLLVESLAVLFRVLIKGDDEYYAAVQDKLPKKITMISWKDYLCKFLEMIKIPKLQQYEATIKRGRYSYVDVNAKLEIFCELVNRALDTAIVREKLHEFIEQRRVLGAAKREEAIEASAKRRKVKEQLKADSGSTCGENGHDLDQDATVSADNSHRIQNGSIRKNRNSETESSTQKYAFDSGIKHSNLASKMSAEKFDSELNRSAVCGKVYNRKESQKQPIGDKDQSEKSYEQRRQYFDREIEKWCVRTSFLGMDRYYNRYWWFYRDGRIFVESPESNEWGYYSSKGELDGLTSSLNCKGERERALLKQLKKYYGRICSELQKNSKDLLHKTTLDDSMVRRSTRVRAPPRKNPAKAFLRYVNKWKEE 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7142g00001 678 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 232 676 - -
Vium7142g00001 678 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Vium7142g00001 678 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Vium7142g00001 678 SMART testlast3 271 332 IPR018501 -
Vium7142g00001 678 MobiDBLite consensus disorder prediction 523 543 - -
Vium7142g00001 678 MobiDBLite consensus disorder prediction 437 487 - -
Vium7142g00001 678 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 558 624 IPR028941 -
Vium7142g00001 678 MobiDBLite consensus disorder prediction 443 487 - -
Vium7142g00001 678 MobiDBLite consensus disorder prediction 527 543 - -
Vium7142g00001 678 ProSiteProfiles DDT domain profile. 271 332 IPR018501 -
Vium7142g00001 678 Pfam DDT domain 272 328 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7142g00001 Vium-Chr7142 14143 20185 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium7142g00001 WAC_Acf1_DNA_bd 5.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7142g00001 - - gmx:100784607 1050.81