Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium713g00003 ATGGGTTTTGATCACGATGCCAGTACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCTACCAAGCCTCAAGATCATCACCATCATCATCATCATCATCATTTTTGTGTTGTTAAGCCTTCGCCAACCAAGCCTAATTCCCCCAATGAACCATCTTTGACGTTGGGTTTGTCTGGCGATAGCTGCCACCTAGCCAAGCAAGTGCCCAACAACAGTAAGGTTTATTGTGAGGACCCTCTTGACATGTCTAGACAGACGTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTGGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGAGTTAGCGATAACGCTTCCAATAAAAGTCCTTTCTCCATGGCTCCCAAGACTCACTTCTACAACCCATTTGCCAATCCTTCTGCAGCATGTTGA 870 0.4816 MGFDHDASTSGLHLVLGLSLTATTTPSTKPQDHHHHHHHHHFCVVKPSPTKPNSPNEPSLTLGLSGDSCHLAKQVPNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium713g00003 289 Coils Coil 206 236 - -
Vium713g00003 289 MobiDBLite consensus disorder prediction 23 65 - -
Vium713g00003 289 SUPERFAMILY Homeodomain-like 142 208 IPR009057 -
Vium713g00003 289 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Vium713g00003 289 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Vium713g00003 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 272 - -
Vium713g00003 289 MobiDBLite consensus disorder prediction 125 143 - -
Vium713g00003 289 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Vium713g00003 289 Gene3D - 148 198 - -
Vium713g00003 289 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Vium713g00003 289 MobiDBLite consensus disorder prediction 90 104 - -
Vium713g00003 289 FunFam Homeobox-leucine zipper protein 18 127 205 - -
Vium713g00003 289 SMART HOX_1 142 204 IPR001356 GO:0003677
Vium713g00003 289 MobiDBLite consensus disorder prediction 31 45 - -
Vium713g00003 289 CDD homeodomain 144 201 IPR001356 GO:0003677
Vium713g00003 289 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Vium713g00003 289 MobiDBLite consensus disorder prediction 83 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium713g00003 Vium-Chr713 27693 29470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium713g00003 1 289 Homeobox Transcription Factor Family AT4G37790 58.306 8.98e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium713g00003 Homeodomain 1.8e-16 CL0123