Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium713g00002 ATGGGTTTTGATCACGATGCCAGTACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCTACCAAGCCTCAAGATCATCACCATCATCATCATCATCATCATTTTTGTGTTGTTAAGCCTTCGCCAACCAAGCCTAATTCCCCCAATGAACCATCTTTGACGTTGGGTTTGTCTGGCGATAGCTGCCACCTAGCCAAGCAAGTGCCCAACAACAGTAAGGTTTATTGTGAGGACCCTCTTGACATGTCTAGACAGACGTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTGGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGGTTTTGGCTTGGTTGTTGCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGAGTTAGCGATAACGCTTCCAATAAAAGTCCTTTCTCCATGGCTCCCAAGACTCACTTCTACAACCCATTTGCCAATCCTTCTGCAGCATGTTGA 891 0.4815 MGFDHDASTSGLHLVLGLSLTATTTPSTKPQDHHHHHHHHHFCVVKPSPTKPNSPNEPSLTLGLSGDSCHLAKQVPNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARFWLGCCRTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium713g00002 296 MobiDBLite consensus disorder prediction 23 65 - -
Vium713g00002 296 Gene3D - 150 196 - -
Vium713g00002 296 MobiDBLite consensus disorder prediction 125 143 - -
Vium713g00002 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 279 - -
Vium713g00002 296 SMART HOX_1 142 204 IPR001356 GO:0003677
Vium713g00002 296 Pfam Homeodomain 144 196 IPR001356 GO:0003677
Vium713g00002 296 MobiDBLite consensus disorder prediction 90 104 - -
Vium713g00002 296 CDD homeodomain 144 198 IPR001356 GO:0003677
Vium713g00002 296 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Vium713g00002 296 MobiDBLite consensus disorder prediction 31 45 - -
Vium713g00002 296 FunFam Homeobox-leucine zipper protein HAT22 148 194 - -
Vium713g00002 296 Pfam Homeobox associated leucine zipper 207 241 IPR003106 GO:0006355|GO:0043565
Vium713g00002 296 Coils Coil 213 243 - -
Vium713g00002 296 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Vium713g00002 296 MobiDBLite consensus disorder prediction 83 143 - -
Vium713g00002 296 SUPERFAMILY Homeodomain-like 137 197 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium713g00002 Vium-Chr713 27693 29479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium713g00002 1 296 Homeobox Transcription Factor Family AT4G37790 58.065 2.35e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium713g00002 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium713g00002 K09338 - gmx:100784129 442.58