Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7131g00003 ATGGGTGGTTCTGTCACTGTCAAGTCCGAGGTTTCCCTTCTAGAATCTTCTCCCTCTCCTGTGGAGAAACCTGAAGGAGTTTGTTCCAACATAGATGAACACCACCTGGTCCAACCCAATATGAATGACTCCTCAACCAACAAGTCAGTGCCAGCGTCTGGACTTAATGCAGTGATTCCTAGTACGAACCAGCTTACCATCTTCTACAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAGTGAAGAAGATTGGGACCCAATCTACCCTCATTTCACCTGTTCCCACAAGGCCTTCTTCTCCACATGCAATCACCAACAATATTGCTGCCTCACAGACAAATTCCATCTGCAGGCTGCAAGAATTTCCAATAGCTCGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGATAGGTACTATCTACCTGCCATGTTTAATGGGGGTTTCTAA 513 0.46 MGGSVTVKSEVSLLESSPSPVEKPEGVCSNIDEHHLVQPNMNDSSTNKSVPASGLNAVIPSTNQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEVKKIGTQSTLISPVPTRPSSPHAITNNIAASQTNSICRLQEFPIARRHSLQRFLEKRRDRYYLPAMFNGGF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7131g00003 170 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Vium7131g00003 170 MobiDBLite consensus disorder prediction 1 26 - -
Vium7131g00003 170 Pfam Jas motif 142 159 IPR018467 -
Vium7131g00003 170 Pfam tify domain 60 92 IPR010399 -
Vium7131g00003 170 SMART tify_2 58 93 IPR010399 -
Vium7131g00003 170 MobiDBLite consensus disorder prediction 1 16 - -
Vium7131g00003 170 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 47 159 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7131g00003 Vium-Chr7131 41147 49525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7131g00003 63 159 Tify Gene Family AT5G20900 51.429 2.14e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium7131g00003 tify 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7131g00003 K13464 - gmx:100306045 236.113