Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7122g00001 ATGGCAATGAAGGGAGACACAATGTTTACGGCCTCAAGCACAGCCTTTGAATGCCACCAAGCTCTATCGGGGATTGAGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCCATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCTGCTTCTTCCTCCAACGAAGGTTCAACATCAACAATCAAGCCAGAACACTAA 333 0.4775 MAMKGDTMFTASSTAFECHQALSGIEQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTIKPEH 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7122g00001 110 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 Gene3D AP2/ERF domain 23 79 IPR036955 GO:0003700|GO:0006355
Vium7122g00001 110 Pfam AP2 domain 23 70 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Vium7122g00001 110 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 97 - -
Vium7122g00001 110 MobiDBLite consensus disorder prediction 90 110 - -
Vium7122g00001 110 CDD AP2 24 80 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 SMART rav1_2 24 84 IPR001471 GO:0003700|GO:0006355
Vium7122g00001 110 MobiDBLite consensus disorder prediction 83 110 - -
Vium7122g00001 110 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7122g00001 Vium-Chr7122 17584 18998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7122g00001 16 104 AP2-EREBP Transcription Factor Family AT2G20880 70.787 2.69e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7122g00001 AP2 3.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7122g00001 - - vum:124844728 219.164