Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium711g00021 ATGACAGAGTACCGGTCGCCGCCGACGATGCATCTCTGGACCGACGACAACTCTTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACTTCTCATCCCTGTGGATGCCCACCCCTCAATCCGCTACCTCTAGCACCACTCCGGGAGCCGACGCTTCTAGAGCCCCGCCGCCACCACCGCCGTCCCAGTCTCAGTCCCTTCTTAACCAGGAGACCTTACAACAACGGCTGCAAACGCTGATCGAAGGTGCCAGAGAGAGCTGGACCTATGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCGGCGCTTCCCTTCTCGGTTGGGGCGACGGATACTACAAGGGCGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAGGAGACTTCGTCCGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATTTCCGGCCCTTCCGCTTCCGCCGATGACGTCGACGAAGAGGTATCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTCCCGGGCCAGGCTTTTTTTAATTCCAATCCCGTTTGGGTCACCGGGCCCGACCGGTTATCCGAATCGGCGTGCGAGCGGGCCCGCCAGGCGCAGGTTTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCGTCTACGGAGGTGATTTTCCAGAACCCTGATCTCATGAGCAAAGTGCGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGTTCCTGGCAGTTGAACTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCTATCGAAATCAAGGACACCTCTAACGCCGTTGCACCCGCTTCAGCAAATGCAGCAGTGAGCAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACAGAAACCCCTAGTGCCGCCGCCGCAGCAGCTCACGTGCCCAACCCCAAGAACCAGGGTTTCTTCCCGAGGGAATTAAACTTCTCCAACTCCTTAAAGCCCGAATCCGGTGAAATTCTTAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTTCCCGCTGTAGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTCTACCGGCTTCGAATGTAAAAGTTGGTGGTAGTGGTGGTGGTGTCGGGGGCGGTGATTCCGAAAACTCGGATCTGGAGGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCAAACGTGTCGAAGATGGACAAGGCGTCGCTGTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAGCTTGAGCTGTCAACCAAAAACCCTCCTCCTCCTTCTCCTCCACGTGGACCATCTCCATCTAAAAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAAGTAGAGGTGAAGATCATAGGGTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCAAGGTTGATGGCAGCGTTGAAGGACCTGGACCTGGACGTGCATCACGCCAGCGTCTCCGTGGTCAATGATTTGATGATCCAACAGGCCACCGTCAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTATCCTCCAAAATTGGCCATGCACTATAG 1953 0.5556 MTEYRSPPTMHLWTDDNSSVMEAFMSSSDFSSLWMPTPQSATSSTTPGADASRAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKETSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSNPVWVTGPDRLSESACERARQAQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMSKVRDLFNFSNPDAGSWQLNCVATDQGENDPSSLWLNPSSSIEIKDTSNAVAPASANAAVSKTMPFETPGSSTLTETPSAAAAAAHVPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSSIDDGMLSFTSGVILPASNVKVGGSGGGVGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSAKKELELSTKNPPPPSPPRGPSPSKKEAKETTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGHAL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium711g00021 650 MobiDBLite consensus disorder prediction 418 473 - -
Vium711g00021 650 MobiDBLite consensus disorder prediction 518 538 - -
Vium711g00021 650 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Vium711g00021 650 CDD bHLH_AtAIB_like 460 536 - -
Vium711g00021 650 SMART finulus 469 518 IPR011598 GO:0046983
Vium711g00021 650 PANTHER MYC 22 645 IPR045084 GO:0003700|GO:0006355
Vium711g00021 650 Gene3D - 455 542 IPR036638 GO:0046983
Vium711g00021 650 MobiDBLite consensus disorder prediction 432 473 - -
Vium711g00021 650 MobiDBLite consensus disorder prediction 518 564 - -
Vium711g00021 650 MobiDBLite consensus disorder prediction 33 65 - -
Vium711g00021 650 FunFam Transcription factor bHLH13 456 530 - -
Vium711g00021 650 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 463 512 IPR011598 GO:0046983
Vium711g00021 650 Pfam Helix-loop-helix DNA-binding domain 467 512 IPR011598 GO:0046983
Vium711g00021 650 Coils Coil 502 543 - -
Vium711g00021 650 MobiDBLite consensus disorder prediction 33 50 - -
Vium711g00021 650 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 532 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium711g00021 Vium-Chr711 235914 238333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium711g00021 1 647 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.231 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium711g00021 bHLH-MYC_N 1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium711g00021 K13422 - gmx:100790854 949.118