Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium711g00005 ATGTCTCCGCCTCTGTTGGTTACTGAAGATGAAGGGCAGAACAATGCCTCAATGGTAGCGTCTGCATCTTCACCATCCATGGAGTGTTTCACCCCACATGAGGCTAGATTGAAAGAACGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGAAAGTTCTACTGTCCCGAACTTGTCTGGTGAGAAAAAGAACATGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATATTTTCCCATTGACCTCAGCAAAACTTGACGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTTCACATTGTCCCAGAAAACTGTGGTCTCCGGCAACAAAAGAGGTTTTGCTGACACGATGGACACTGAGTTTCCTGGAAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGGATTCTGCCAACCATAGTGAAAGAAGTATCCAGCAAGGTTTTACAGGAACGTCCTGCTGCAGCAAATGGAACTGGTCTTAACCATACAGGAGCTTCTATCAGTGGCAGTGCACCTGCTTCCAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAATAGATGGAAAACCATGTCCAGCCGCACTCTTTGTGAAAGTCAGCATGGATGGTGCTCCCTATCTGAGGAAAGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGTGCCAGGAAGAGAAATCTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCGGAATATGTACTTACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTTAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCAAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAG 1047 0.4556 MSPPLLVTEDEGQNNASMVASASSPSMECFTPHEARLKERNYLGLSDCSSVESSTVPNLSGEKKNMNLKATELRLGLPGSQSPERDPDIFPLTSAKLDEKPLFPLLPTKDGIFTLSQKTVVSGNKRGFADTMDTEFPGNAGINMMLSPKPSGILPTIVKEVSSKVLQERPAAANGTGLNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEIDGKPCPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGVPGREILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium711g00005 348 Pfam AUX/IAA family 71 339 IPR033389 -
Vium711g00005 348 Gene3D - 226 341 - -
Vium711g00005 348 MobiDBLite consensus disorder prediction 1 26 - -
Vium711g00005 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Vium711g00005 348 MobiDBLite consensus disorder prediction 7 26 - -
Vium711g00005 348 MobiDBLite consensus disorder prediction 173 192 - -
Vium711g00005 348 SUPERFAMILY CAD & PB1 domains 225 329 - -
Vium711g00005 348 MobiDBLite consensus disorder prediction 177 191 - -
Vium711g00005 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Vium711g00005 348 FunFam Auxin-responsive protein 224 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium711g00005 Vium-Chr711 66938 71578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium711g00005 231 327 B3 DNA Binding Superfamily AT2G46530 36.082 6.53e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium711g00005 AUX_IAA 1.4e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium711g00005 K14484 - gmx:100789251 612.068