Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00025 ATGGATGTCCCAGAAAAGAACCGGTCCATTTCTGAGGTGACTTTGGAGCGAGTGTCGGGTTTGTTTGGGTCCTTTCCAATCTTCCCTTCAACTGGCAGAACCAGAGGTACACTACTTCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCTGAAACTTTGTAGGAATGCCTCTAGTGCATGTGATACGATTAGCTCTTCTCAATGTGATCAATCAGATCCAGCTCCTTTGAAGGGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAATCACTTTATAAGGTCTTGGTTTCTATCTCGGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAGCTAATAAAGAAACTTTCAGGACCAGTACTAATACTCGGTTCGCAGATATTTGATTATGAAAAGGATCCCGAAATTGATGACAAGCTCACTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAAATGACAGCGATCTTGCAATCTGGAAAACCAAACTGAAAGAGGACACAAAAACAATTCTGTTTCAAGATAGCAGAAACCACATTGCAGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCCGTCTGCCATGCTGACACTATGCTACTCAGTAGTTGCATTGAAGAGATTGTGGCAGCAGCAGTTTCTCACCACCTAAAGAGAACTAAAGATCCAGAATACCGAAATGGAAAATTAGTTATATCGGCCAAGAGTTTGTCCTATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACCAAAGATTCAAACAAGGATGTTCCTCCTGACAACGAGTATGAGAAGCGCATGAGAGCAGATGTGGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATTAAAGAAATACTTCAAGATGAAGTCCTACTTCCCCTCAGAAGACCAGATTTATTCAATGGTGGGCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATATCGACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCTGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGGCAACGGACTAAATCTGGTGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGACTATTGTCAAAACCCGGTAAGCGAATTCTGGTTCTTGCTGCAACTAACAGGCCATATGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTGCTGAAAACAGGGAAAGGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAAAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCCTATCGACTTGTTAGAGAGCTACTACGACAGGAGAGGATTAAGGAAAATAACAAAAAGGAGGCAGTAGTTCAAAGCTCAGAAAGTGCATCTGATGCTAAAGAAGATAAAGAAAACCGAGTTATTACTTTGAGACCTATTAACATGGATGACATGAGACAGGCAAAGAGTCAGGTGACTGCTAGTTTTGCAGCAGAAGGATCAATAATGAGTGAGCTTGAGGAGTGGAATGATTTATTTGGAGAAGGAGGTTCAAGGAAGAAGAAGCAGGAGCAGCTTACTTATTTTCTTTAG 1869 0.4034 MDVPEKNRSISEVTLERVSGLFGSFPIFPSTGRTRGTLLRQSSEIENSSNPLKLCRNASSACDTISSSQCDQSDPAPLKGTSGFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGPVLILGSQIFDYEKDPEIDDKLTMLFPYNIEIKPPQNDSDLAIWKTKLKEDTKTILFQDSRNHIAEVLAASDIDCDDLNSVCHADTMLLSSCIEEIVAAAVSHHLKRTKDPEYRNGKLVISAKSLSYVLSLFQESESNSETKDSNKDVPPDNEYEKRMRADVVPAKEIGVRFEDIGALDDIKEILQDEVLLPLRRPDLFNGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSAENRERILKTLLAKEKYENIDFKELSIMTKGYTGSDLKNLCTAAAYRLVRELLRQERIKENNKKEAVVQSSESASDAKEDKENRVITLRPINMDDMRQAKSQVTASFAAEGSIMSELEEWNDLFGEGGSRKKKQEQLTYFL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00025 622 ProSitePatterns AAA-protein family signature. 451 470 IPR003960 GO:0005524|GO:0016887
Vium7115g00025 622 SMART AAA_5 344 481 IPR003593 GO:0016887
Vium7115g00025 622 Pfam AAA+ lid domain 500 543 IPR041569 -
Vium7115g00025 622 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 78 621 - -
Vium7115g00025 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 544 IPR027417 -
Vium7115g00025 622 MobiDBLite consensus disorder prediction 544 565 - -
Vium7115g00025 622 Pfam ATPase family associated with various cellular activities (AAA) 348 477 IPR003959 GO:0005524|GO:0016887
Vium7115g00025 622 Gene3D - 307 589 IPR027417 -
Vium7115g00025 622 Gene3D - 480 582 - -
Vium7115g00025 622 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 307 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00025 Vium-Chr7115 161524 166794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7115g00025 308 550 Calmodulin-binding Proteins AT3G56690 40.486 1.65e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00025 - - gmx:121172906 955.666