Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00023 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTGGGATTGGGAGTAGGACTTGGATTGAGTACAGGACAGGCTGTTCAAAAATGGGTGGGAGGGAGTTGTGAATCAGATGAGATTTCTGGGGAGCAAATTGTGCTGGAGCTGAACAACAAAGTCATTGATGGGAAGAACAGCAAAACCACATTTGAAGACTTTCCTTATTACTTAAGTGAAAGAGACCAATTTTCGTTAACAAGTGCTGGATATGTTTATTTGAAACAAGACTTTTCCAAGCACATGAGGAACCTTTGTCCAGCAAGCAGAGCTATGTTGCTTTGTGGACCTGCAGAACTTTATCAGCAAAAGGTTGCCCAAGCTTTAGCTCAGTGCTTTGGATCGAAGTTGCTGTTGCTAGACATAATTGACTTCTCCTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCGTATTTTAAAAGGTCCATTTCTGAGGTGACTTTGGAGCGAGTGTCGGGTTTGTTTGGGTCCTTTCCAATCTTCCCTTCAACTGGCAGAACCAGAGGTACACTACTTCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCTGAAACTTTGTAGGAATGCCTCTAGTGCATGTGATACGATTAGCTCTTCTCAATGTGATCAATCAGATCCAGCTCCTTTGAAGGGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAATCACTTTATAAGGTCTTGGTTTCTATCTCGGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAGCTAATAAAGAAACTTTCAGGACCAGTACTAATACTCGGTTCGCAGATATTTGATTATGAAAAGGATCCCGAAATTGATGACAAGCTCACTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAAATGACAGCGATCTTGCAATCTGGAAAACCAAACTGAAAGAGGACACAAAAACAATTCTGTTTCAAGATAGCAGAAACCACATTGCAGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCCGTCTGCCATGCTGACACTATGCTACTCAGTAGTTGCATTGAAGAGATTGTGGCAGCAGCAGTTTCTCACCACCTAAAGAGAACTAAAGATCCAGAATACCGAAATGGAAAATTAGTTATATCGGCCAAGAGTTTGTCCTATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACCAAAGATTCAAACAAGGATGTTCCTCCTGACAACGAGTATGAGAAGCGCATGAGAGCAGATGTGGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATTAAAGAAATACTTCAAGATGAAGTCCTACTTCCCCTCAGAAGACCAGATTTATTCAATGGTGGGCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATATCGACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCTGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGGCAACGGACTAAATCTGGTGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGACTATTGTCAAAACCCGGTAAGCGAATTCTGGTTCTTGCTGCAACTAACAGGCCATATGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTGCTGAAAACAGGGAAAGGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAAAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCCTATCGACTTGTTAGAGAGCTACTACGACAGGAGAGGATTAAGGAAAATAACAAAAAGGAGGCAGTAGTTCAAAGCTCAGAAAGTGCATCTGATGCTAAAGAAGATAAAGAAAACCGAGTTATTACTTTGAGACCTATTAACATGGATGACATGAGACAGGCAAAGAGTCAGGTGACTGCTAGTTTTGCAGCAGAAGGATCAATAATGAGTGAGCTTGAGGAGTGGAATGATTTATTTGGAGAAGGAGGTTCAAGGAAGAAGAAGCAGGAGCAGCTTACTTATTTTCTTTAG 2319 0.4066 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGEQIVLELNNKVIDGKNSKTTFEDFPYYLSERDQFSLTSAGYVYLKQDFSKHMRNLCPASRAMLLCGPAELYQQKVAQALAQCFGSKLLLLDIIDFSLEMQRKYGCPRKEPYFKRSISEVTLERVSGLFGSFPIFPSTGRTRGTLLRQSSEIENSSNPLKLCRNASSACDTISSSQCDQSDPAPLKGTSGFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGPVLILGSQIFDYEKDPEIDDKLTMLFPYNIEIKPPQNDSDLAIWKTKLKEDTKTILFQDSRNHIAEVLAASDIDCDDLNSVCHADTMLLSSCIEEIVAAAVSHHLKRTKDPEYRNGKLVISAKSLSYVLSLFQESESNSETKDSNKDVPPDNEYEKRMRADVVPAKEIGVRFEDIGALDDIKEILQDEVLLPLRRPDLFNGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSAENRERILKTLLAKEKYENIDFKELSIMTKGYTGSDLKNLCTAAAYRLVRELLRQERIKENNKKEAVVQSSESASDAKEDKENRVITLRPINMDDMRQAKSQVTASFAAEGSIMSELEEWNDLFGEGGSRKKKQEQLTYFL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00023 772 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 457 631 - -
Vium7115g00023 772 Gene3D - 457 739 IPR027417 -
Vium7115g00023 772 Pfam ATPase family associated with various cellular activities (AAA) 498 627 IPR003959 GO:0005524|GO:0016887
Vium7115g00023 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 694 IPR027417 -
Vium7115g00023 772 Gene3D - 630 732 - -
Vium7115g00023 772 Pfam AAA+ lid domain 650 693 IPR041569 -
Vium7115g00023 772 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 771 - -
Vium7115g00023 772 SMART AAA_5 494 631 IPR003593 GO:0016887
Vium7115g00023 772 ProSitePatterns AAA-protein family signature. 601 620 IPR003960 GO:0005524|GO:0016887
Vium7115g00023 772 MobiDBLite consensus disorder prediction 694 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00023 Vium-Chr7115 161524 169100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7115g00023 458 700 Calmodulin-binding Proteins AT3G56690 40.486 1.08e-45 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00023 - - gmx:121172906 1192.18