Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00022 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTGGGATTGGGAGTAGGACTTGGATTGAGTACAGGACAGGCTGTTCAAAAATGGGTGGGAGGGAGTTGTGAATCAGATGAGATTTCTGGGGAGCAAATTGTGCTGGAGCTGAACAACAAAGTCATTGATGGGAAGAACAGCAAAACCACATTTGAAGACTTTCCTTATTACTTAAGTGAAAGAGACCAATTTTCGTTAACAAGTGCTGGATATGTTTATTTGAAACAAGACTTTTCCAAGCACATGAGGAACCTTTGTCCAGCAAGCAGAGCTATGTTGCTTTGTGGACCTGCAGAACTTTATCAGCAAAAGGTTGCCCAAGCTTTAGCTCAGTGCTTTGGATCGAAGTTGCTGTTGCTAGACATAATTGACTTCTCCTTGGAGAGGAAATATGGATGTCCCAGAAAAGAACCGTATTTTAAAAGGTCCATTTCTGAGGTGACTTTGGAGCGAGTGTCGGGTTTGTTTGGGTCCTTTCCAATCTTCCCTTCAACTGGCAGAACCAGAGGTACACTACTTCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCTGAAACTTTGTAGGAATGCCTCTAGTGCATGTGATACGATTAGCTCTTCTCAATGTGATCAATCAGATCCAGCTCCTTTGAAGGGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAATCACTTTATAAGGTCTTGGTTTCTATCTCGGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAGCTAATAAAGAAACTTTCAGGACCAGTACTAATACTCGGTTCGCAGATATTTGATTATGAAAAGGATCCCGAAATTGATGACAAGCTCACTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAAATGACAGCGATCTTGCAATCTGGAAAACCAAACTGAAAGAGGACACAAAAACAATTCTGTTTCAAGATAGCAGAAACCACATTGCAGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCCGTCTGCCATGCTGACACTATGCTACTCAGTAGTTGCATTGAAGAGATTGTGGCAGCAGCAGTTTCTCACCACCTAAAGAGAACTAAAGATCCAGAATACCGAAATGGAAAATTAGTTATATCGGCCAAGAGTTTGTCCTATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACCAAAGATTCAAACAAGGATGTTCCTCCTGACAACGAGTATGAGAAGCGCATGAGAGCAGATGTGGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATTAAAGAAATACTTCAAGATGAAGTCCTACTTCCCCTCAGAAGACCAGATTTATTCAATGGTGGGCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATATCGACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCTGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGGCAACGGACTAAATCTGGTGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGACTATTGTCAAAACCCGGTAAGCGAATTCTGGTTCTTGCTGCAACTAACAGGCCATATGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTGCTGAAAACAGGGAAAGGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAAAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCCTATCGACTTGTTAGAGAGCTACTACGACAGGAGAGGATTAAGGAAAATAACAAAAAGGAGGCAGTAGTTCAAAGCTCAGAAAGTGCATCTGATGCTAAAGAAGATAAAGAAAACCGAGTTATTACTTTGAGACCTATTAACATGGATGACATGAGACAGGCAAAGAGTCAGGTGACTGCTAGTTTTGCAGCAGAAGGATCAATAATGAGTGAGCTTGAGGAGTGGAATGATTTATTTGGAGAAGGAGGTTCAAGGAAGAAGAAGCAGGAGCAGCTTACTTATTTTCTTTAG 2313 0.4064 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGEQIVLELNNKVIDGKNSKTTFEDFPYYLSERDQFSLTSAGYVYLKQDFSKHMRNLCPASRAMLLCGPAELYQQKVAQALAQCFGSKLLLLDIIDFSLERKYGCPRKEPYFKRSISEVTLERVSGLFGSFPIFPSTGRTRGTLLRQSSEIENSSNPLKLCRNASSACDTISSSQCDQSDPAPLKGTSGFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGPVLILGSQIFDYEKDPEIDDKLTMLFPYNIEIKPPQNDSDLAIWKTKLKEDTKTILFQDSRNHIAEVLAASDIDCDDLNSVCHADTMLLSSCIEEIVAAAVSHHLKRTKDPEYRNGKLVISAKSLSYVLSLFQESESNSETKDSNKDVPPDNEYEKRMRADVVPAKEIGVRFEDIGALDDIKEILQDEVLLPLRRPDLFNGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSAENRERILKTLLAKEKYENIDFKELSIMTKGYTGSDLKNLCTAAAYRLVRELLRQERIKENNKKEAVVQSSESASDAKEDKENRVITLRPINMDDMRQAKSQVTASFAAEGSIMSELEEWNDLFGEGGSRKKKQEQLTYFL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00022 770 Gene3D - 455 737 IPR027417 -
Vium7115g00022 770 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 455 629 - -
Vium7115g00022 770 Pfam AAA+ lid domain 648 691 IPR041569 -
Vium7115g00022 770 Gene3D - 628 730 - -
Vium7115g00022 770 Pfam ATPase family associated with various cellular activities (AAA) 496 625 IPR003959 GO:0005524|GO:0016887
Vium7115g00022 770 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 769 - -
Vium7115g00022 770 ProSitePatterns AAA-protein family signature. 599 618 IPR003960 GO:0005524|GO:0016887
Vium7115g00022 770 SMART AAA_5 492 629 IPR003593 GO:0016887
Vium7115g00022 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 692 IPR027417 -
Vium7115g00022 770 MobiDBLite consensus disorder prediction 692 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00022 Vium-Chr7115 161524 169100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7115g00022 456 698 Calmodulin-binding Proteins AT3G56690 40.486 9.98e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00022 - - gmx:121172906 1183.32