Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00018 ATGGAACACCAATCACCACCACCATCGCCACCGCCGCCACCACCACCACAACCACCCAAAACCTACACACTAACCGCCACCTCAATATGCTACACCAAATCCTCCTCCACTAAACTTCCTTCCCTCTTCAACCATTGCACCACCACCCCTCCAGCCTACATCCTCAAGGACGTCTCCCTCACCGCCCACCCTTCCCAAATCCTCGCCGTCGTCGGCCCCAGCGGCGCCGGGAAGTCTACCCTCCTGGACATTCTCGCCGCCCGAACCCTCCCCTCCCACGGCACGCTCTCCGTCAATTCCTCCCCTCTCCTCCCCTCCTCCTTTCGCAAGCTCTCCTCTTACGTCCCCCAACACGACCACTCCCTCCCTCTTCTCACCGTCTCCGAAACCTTCCTCTTCGCCGCCACCCTCCTCAAACCCTCCGTCCCCGACCTTCGCGCCCTCGTCTCCCAACTCCTTTCCCAACTGCGCCTCTCCCATCTTGCCCACACGCGCCTCGCCCACGGCCTCTCCGGTGGCGAACGCAGAAGGGTCTCCATCGGTCTCAGCCTCCTCCACGATCCTGCCGTTTTACTCCTGGACGAACCCACTTCGGGGCTTGACAGCACTTCCGCCTTCAAAGTCATGCAGATTCTCAAGCAAACTTGCCTCTCTCGCAACAGAACCATCATCCTCTCCATCCACCAACCCAGCTTCAAGATCCTCTCTTGCATTGACAGGATCTTGCTGCTTTCCAAAGGAACCGTCGTTCATCATGGAACCGTTGCCACCTTACAGGCCTTCTTGCACTCTAATGGCTACACCGTCCCTCAGCAACTCAATGCCTTGGAATATGCCATGGAGATTTTGAATGAGGTTAAGCCTCTCACTCCACCCAGTCTTCCCGAGTCCCCCGAAAGTTCAAGTTCAAGTTCACTAAATTTGGTTCCCGGTGGTGGACGAACAGGGAGCAGTAGAGAGAGCATCATGTATAAAAGCTCTAGGGTGCACGAGATTTACACTCTTTACGTAAGATTTTGGAAGATTATTTACCGAACAAGGCAACTTCTTCTGACCAACACTGCCGAAGCGCTTCTCGTGGGGCTTGTTTTGGGAACTATTTATATAAACATAGGTTTTGGTAAAGAAGGGATCGAGAAAAGGTTTGGTCTGTTTGCTTTCACTCTCACGTTTCTCTTATCTTCCACCACCGAAACCCTTCCCATCTTCATCAACGAGAGGCCTATCATATTAAGAGAAACTTCCAGTGGGGTTTATAGGCTCTCTTCTCATCTCATTGCAAATACGCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTTATATATTCTATCCCCGTTTACTTCTTGGTTGGCCTTTGTGCCTCATGGCTTTCTTTTGCTTACTTTGTTCTGGTCATTTGGGTCATAGTTCTCATGGCAAATTCCTTCGTGCTCTTCTTGAGCTCTCTTGCACCCAACTACATTGCCGGAACTTCCCTCTTGACGGTGCTTCTGGCAGCGTTTTTTCTGTTCTCTGGTTACTTTATCTCCAAAGATAGCCTGCCCAAGTACTGGCTTTTCATGCACTTCTTGTCCATGTACAAATACGCTCTTGACGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGTCAAAGTGTTTGATATGGTACCAAGAGAATGAGCAGTGCATGATCACCGGGGCTGACGTGCTACAGAAGAAAGGGCTCAAAGAGAGTGAAAGGTGGACCAACGTCTACATCTTGATCGGTTTCTTTTTATTGTATCGTTTGCTTTGCTTCTTGGTTTTGATTCGGAGGGTGTCGAGATCCAAAACATAA 1821 0.5085 MEHQSPPPSPPPPPPPQPPKTYTLTATSICYTKSSSTKLPSLFNHCTTTPPAYILKDVSLTAHPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLSVNSSPLLPSSFRKLSSYVPQHDHSLPLLTVSETFLFAATLLKPSVPDLRALVSQLLSQLRLSHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCLSRNRTIILSIHQPSFKILSCIDRILLLSKGTVVHHGTVATLQAFLHSNGYTVPQQLNALEYAMEILNEVKPLTPPSLPESPESSSSSSLNLVPGGGRTGSSRESIMYKSSRVHEIYTLYVRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFGKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRLSSHLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMHFLSMYKYALDALLINEYSCLVSKCLIWYQENEQCMITGADVLQKKGLKESERWTNVYILIGFFLLYRLLCFLVLIRRVSRSKT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00018 606 Gene3D - 43 287 IPR027417 -
Vium7115g00018 606 FunFam ATP-binding cassette transporter 44 264 - -
Vium7115g00018 606 SMART AAA_5 64 248 IPR003593 GO:0016887
Vium7115g00018 606 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524|GO:0016887
Vium7115g00018 606 MobiDBLite consensus disorder prediction 1 21 - -
Vium7115g00018 606 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 591 - -
Vium7115g00018 606 Pfam ABC-2 type transporter 228 286 IPR043926 GO:0140359
Vium7115g00018 606 Pfam ABC transporter 55 198 IPR003439 GO:0005524
Vium7115g00018 606 MobiDBLite consensus disorder prediction 1 23 - -
Vium7115g00018 606 Pfam ABC-2 type transporter 331 540 IPR013525 GO:0016020|GO:0140359
Vium7115g00018 606 MobiDBLite consensus disorder prediction 290 318 - -
Vium7115g00018 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 262 IPR027417 -
Vium7115g00018 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 271 IPR003439 GO:0005524
Vium7115g00018 606 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00018 Vium-Chr7115 125392 127471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7115g00018 48 301 Calmodulin-binding Proteins AT2G36910 28.044 1.18e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00018 K05681 - gmx:100790712 897.116