Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00015 ATGGATGAGGACTGGGATCTCTTTGCCATCGTCAGAAGCTGCCAATCAGCTACCAATACTTCCACCGCAGCAATTCCAGAAACCACCACCGATACTACTTCATCTTCTCTCTTCACTTCCTTTCTCAAGGAAGACAGATACGATGCATTTTCCTTTCCCAATACAGTCCAACCCATACCAAATGAGTTTCACCAGCTACACCGATTCTTTTCACCCTTTAACCCCACCACCACCAACGCCACTACCCTCAGTGCTCCTCGCATCAATCCTAATTCCCCTTATTTTGCCCAACAGGAAAGCCAGCAAATTAGTGACCACCTTCCCATTTTGCCTCATTTTCTGCCAGAACCCTCCACTCCCAGTTTTAATAGATTCCCTGACCATCAACAACAGCAACAGAATCAACTACAGTTACTTCATAAACAGGAATTTCATACACCCCAGAACAATTCACCCACAGTTTCACCAAACGCACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGTCAGGTAACCGCAGATAAACTCTCGGCAGATTTGTGGGCGTGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCGTATCCAAGGAATTACTATAGGTGTAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACTGAAACCGATGTGTTCATCGTTACGTACACCGGAGACCACTCGCATCCCCGGCCAACCCACCGGAACTCCCTCGCCGGAAGTACCCGAAGTAAAAATCCGACAACGAATCCGCCGGCTTTACACGGGTCACTCTCCTTCCAAGCCGCCCCCTTTTCTTCTTCTTCTTCTTCTCCACCACTCTCTCCAACGTCGCCGTCGGAAGATCCACCAGAAGCCGGCGACGTTGAACCTGACCCGGACATGGAAACCGACATGGACGATGACGGTGACATCCGATGA 963 0.4829 MDEDWDLFAIVRSCQSATNTSTAAIPETTTDTTSSSLFTSFLKEDRYDAFSFPNTVQPIPNEFHQLHRFFSPFNPTTTNATTLSAPRINPNSPYFAQQESQQISDHLPILPHFLPEPSTPSFNRFPDHQQQQQNQLQLLHKQEFHTPQNNSPTVSPNAQPQTPKSRKRKSQQKKMVCQVTADKLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDVFIVTYTGDHSHPRPTHRNSLAGSTRSKNPTTNPPALHGSLSFQAAPFSSSSSSPPLSPTSPSEDPPEAGDVEPDPDMETDMDDDGDIR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00015 320 Gene3D WRKY domain 168 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7115g00015 320 SUPERFAMILY WRKY DNA-binding domain 182 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7115g00015 320 MobiDBLite consensus disorder prediction 299 320 - -
Vium7115g00015 320 MobiDBLite consensus disorder prediction 236 320 - -
Vium7115g00015 320 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 310 IPR044810 GO:0003700
Vium7115g00015 320 FunFam WRKY transcription factor 22 168 239 - -
Vium7115g00015 320 MobiDBLite consensus disorder prediction 248 289 - -
Vium7115g00015 320 MobiDBLite consensus disorder prediction 81 175 - -
Vium7115g00015 320 MobiDBLite consensus disorder prediction 122 165 - -
Vium7115g00015 320 MobiDBLite consensus disorder prediction 81 105 - -
Vium7115g00015 320 SMART WRKY_cls 185 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7115g00015 320 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7115g00015 320 ProSiteProfiles WRKY domain profile. 180 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00015 Vium-Chr7115 105044 106809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7115g00015 164 309 WRKY Transcription Factor Family AT5G52830 60.544 4.70e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium7115g00015 WRKY 9.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00015 - - gmx:100792164 409.838