Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7115g00008 ATGGTATCTAAAAACTCCAACCCTTCAGAGACTTTTTACATGGACCCTTCTGCTATGTCGCTCCCCAGAATACTCCATTTTTCCGCCACTACCCCTGCCGATTCTCTTGAGGACCCTGCTAAGAAGACTCGCAAACCTTACACTATCACCAAGTCTAGGGAGAGTTGGACCGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGAAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAATGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATACCCTCAGAAAGCTTCAAAAAATGTTCCAGTGCTCTCACAAGTATCAGGGTCCTTTCAATCATCATCGGCTTTGCTTGAACCAGGGTACATTATGAAGCGTGATTCTTCAGCAATGCTTAAAACTCCTATTATTAACGCTGCAGCGTCTTCCTGGTCAAACAATTCTCTGCAGAAAAGCACCAATTTATTGCATGGCCACAAAGTGAATAATTGTTGCAGTAACGGTGGAAGTCCTAGAGCACAGTTGGTTGGTGAAGCTAATGGTCAAGGGAATAATATCCATCCATTGAGAATTCTTCCAGATTTTGGTCAAGTTTACGGCTTCATTGGTAGTGTATTTGATCCAAATGTAACTGGACATCTGCAGAAACTGAAACGAATGGACCCTATAGATGTTGAGACAGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGTAAGCCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAAGTGGAACCTGAGTCAGATAACTATTATATCAATGCAGATCGAAACATGGTTGAAGGGCAGTTGAAGAGTGTTACTTAG 933 0.4244 MVSKNSNPSETFYMDPSAMSLPRILHFSATTPADSLEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNVPVLSQVSGSFQSSSALLEPGYIMKRDSSAMLKTPIINAAASSWSNNSLQKSTNLLHGHKVNNCCSNGGSPRAQLVGEANGQGNNIHPLRILPDFGQVYGFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLVSPDFEDHRRLLASYEVEPESDNYYINADRNMVEGQLKSVT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7115g00008 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 100 IPR006447 GO:0003677
Vium7115g00008 310 PANTHER SWI/SNF COMPLEX-RELATED 28 270 - -
Vium7115g00008 310 CDD SANT 55 98 IPR001005 -
Vium7115g00008 310 ProSiteProfiles SANT domain profile. 51 104 IPR017884 -
Vium7115g00008 310 SMART sant 52 100 IPR001005 -
Vium7115g00008 310 MobiDBLite consensus disorder prediction 103 127 - -
Vium7115g00008 310 FunFam protein REVEILLE 6 isoform X1 55 103 - -
Vium7115g00008 310 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Vium7115g00008 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 102 IPR017930 -
Vium7115g00008 310 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Vium7115g00008 310 Pfam Myb-like DNA-binding domain 53 98 IPR001005 -
Vium7115g00008 310 Gene3D - 56 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7115g00008 Vium-Chr7115 44744 48676 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium7115g00008 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7115g00008 - - gmx:100794389 489.189