LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7115g00002	ATGAACACCGTATTCCTCATACCCTCTATCCTTCTCCTTCTCCTTCTCACACCCTTCTCACTTTCATTCTCTCCCACAGATAACTTCCTTCTCAGTTGTGGATCACACAACAATGCTTCCCTCTTCAACAGAGTCTTCACGGGCGATTCCACCAACCCAGGTTCCAATTTTCTCTCTTCAGGTGATTCTGTTTCACTCGCATATCAAAAGCCACCTCAGAATTTGCCCGCTTTGTACCATACAGCAAGAGTTTTCAGCAGCAGTGGGAGCTACAGGTTCAATATGAAGAAAAACGGCACCCACTTTGTTCGTTTTCATTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTAAAATCGGCAAACTTTAGTGTCTTTGTTAATGGGGCTTCGGTGCTGAGCAATTTCCAGCCACCTAATGATGTGCTTCTCAAAGAGTTCATTCTAAACATAGAGTCAAACTTTCTTGAGATTTTGTTTAGGCCTGTTGGTGACTCAGGTTTTGCCTTTGTCAATGCTTTGGAGGTGTTTACTGCCCCTGCGGATTTTGTCATAGATTTTGGAGGCAGGGCGGTTGGTCCTTCTGGGGTGGAAGAGTACCGAAACCTTTCATCTAAGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTGTTTAAGGGTGCAGCAAAGCCTGCAGTGAGCACTCACATACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCTAGGTTCAACATAACCTGGAACTTTCCTGTGTCTCCTGGTGGTGTTCCACACTTGGTTCGATTGCATTTCTGCGATATTGTTAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCATACAAGGATCTTGATTTGTCAGCGCTTACCATCCACACGCTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGACTCGGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTAAGCAGTTCCATAAGGATGAATGCCATATTGAATGGTGCAGAGATAATGGAGATGCTCAATGATGTCAGTACTAAAGTTGTGCATAGGAAGAAGAATTTGTGGGTGTTGGTGGGTTCAGTTGTTGGAGGAATTGTTGTCTTTTTTTTAGTTGTAACTGCTTTTCTACTTGGTACCAAATGCAGGAACAAGAAACCAAAACCAAGGACATTGGAAAGTGTTGGATGGACACCTTTAAGCATGTTTGGAGGGAGTTCCCTCAGTAGAAGCTCCGAGCCTGGTTCACATGGACTTCTTGGCTTGAAGATCCCTTTTGCTGAAATAAAATCAGCAACAAACAACTTCGATAGAAATTTAATTATAGGGTCTGGTGGGTTTGGTATGGTCTACAAAGGAGTGTTCAGAGACAATACGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGCCTTCCCGAGTTCCAAACTGAGATAACTGTTTTGTCCAAAATTCGCCATCGCCACCTTGTTTCACTGGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCGCTGAAGAAGCATTTATATGGCTCATCACGACAAACACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCAGCCAGAGGTCTTCACTATCTTCACACTGGCTTTGCTCAAGGAATCATCCACCGTGACATTAAATCAACCAACATATTGCTTGATGAAGACTATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGACCGTGCATCGATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACCGGAGACAGCAGCTTACGGATAAGTCAGATGTTTATTCATTTGGTGTAGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAATTAGCTAGAGAACAGGTCAATTTGGCAGAATGGGCACTTGAGTGGCTGAAGAAAGGCATGCTGGACAAAATTGTTGACCCCCATCTTGTTGGACAAATCCAACAAGACTCCTTAAAAAAATTTTGTGAAACTGCAGAGAAATGTTTGTCTGAGTATGGAGTTGATAGACCAGCTATGGGTGATGTCTTATGGAATTTGGAGTATGCACTTCAGCTCCAAGAAAGTGAACAACAAAGGGAGCCACATGCCAACAGCAGTGCTAGTGAAGCTGCAAGTTTGACCAGTACAGTTATTCCTGGAAATCCTTCTACCAACACAAGAGCAGAGAGGGATTATGATAATTTTTCTTCTGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAATGAAGGTAGATAG	2475	0.4299	MNTVFLIPSILLLLLLTPFSLSFSPTDNFLLSCGSHNNASLFNRVFTGDSTNPGSNFLSSGDSVSLAYQKPPQNLPALYHTARVFSSSGSYRFNMKKNGTHFVRFHFSPFKAQSFDLKSANFSVFVNGASVLSNFQPPNDVLLKEFILNIESNFLEILFRPVGDSGFAFVNALEVFTAPADFVIDFGGRAVGPSGVEEYRNLSSKVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGAAKPAVSTHIPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSPGGVPHLVRLHFCDIVSPALNLLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDSGFVQVSVGPSELSSSIRMNAILNGAEIMEMLNDVSTKVVHRKKNLWVLVGSVVGGIVVFFLVVTAFLLGTKCRNKKPKPRTLESVGWTPLSMFGGSSLSRSSEPGSHGLLGLKIPFAEIKSATNNFDRNLIIGSGGFGMVYKGVFRDNTKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSRQTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDEDYVAKVADFGLSRSGPCIDETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLKKGMLDKIVDPHLVGQIQQDSLKKFCETAEKCLSEYGVDRPAMGDVLWNLEYALQLQESEQQREPHANSSASEAASLTSTVIPGNPSTNTRAERDYDNFSSDVSTSQVFSQLMNNEGR	824

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7115g00002	824	Gene3D	Phosphorylase Kinase; domain 1	458	560	-	-
	Vium7115g00002	824	SMART	serkin_6	485	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7115g00002	824	ProSitePatterns	Protein kinases ATP-binding region signature.	491	513	IPR017441	GO:0005524
	Vium7115g00002	824	Pfam	Protein tyrosine and serine/threonine kinase	490	684	IPR001245	GO:0004672\|GO:0006468
	Vium7115g00002	824	ProSiteProfiles	Protein kinase domain profile.	485	759	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7115g00002	824	CDD	STKc_IRAK	491	757	-	-
	Vium7115g00002	824	Pfam	Malectin-like domain	31	388	IPR024788	-
	Vium7115g00002	824	SUPERFAMILY	Protein kinase-like (PK-like)	473	757	IPR011009	-
	Vium7115g00002	824	FunFam	Putative receptor-like protein kinase	28	179	-	-
	Vium7115g00002	824	FunFam	Receptor-like protein kinase FERONIA	561	774	-	-
	Vium7115g00002	824	FunFam	receptor-like protein kinase FERONIA	454	560	-	-
	Vium7115g00002	824	PANTHER	OS07G0166700 PROTEIN	472	763	IPR045272	GO:0004714\|GO:0006468
	Vium7115g00002	824	Gene3D	Transferase(Phosphotransferase) domain 1	561	783	-	-
	Vium7115g00002	824	FunFam	Receptor-like protein kinase FERONIA	206	391	-	-
	Vium7115g00002	824	Gene3D	-	206	391	-	-
	Vium7115g00002	824	Gene3D	-	28	180	-	-
	Vium7115g00002	824	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Vium7115g00002	824	MobiDBLite	consensus disorder prediction	765	824	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7115g00002	Vium-Chr7115	13760	17237	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7115g00002	3	824	Receptor kinase-like Gene Family	AT3G46290	48.582	0.0	737

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium7115g00002		Malectin_like	3.9e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7115g00002	-		-	gmx:100801169	1471.83