Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7111g00004 ATGTTATTACCAAAAAAGGAAGTAGCAGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAATTCTCTAGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACTTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGCTGAAGGTGGAGCTTCCTCTCTGGGTCAGTCTCCTGGTTATTACTATCCTTCTCCCTGGAACAATGATCCACTTGGCGATGGTTATCACCGAGGTGACAATAATATGTGA 537 0.4507 MLLPKKEVAGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMAEGGASSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7111g00004 178 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Vium7111g00004 178 Coils Coil 105 125 - -
Vium7111g00004 178 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Vium7111g00004 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7111g00004 Vium-Chr7111 48497 50250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7111g00004 14 129 AS2 family AT3G27650 81.897 1.08e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium7111g00004 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7111g00004 - - gmx:100306630 345.895