Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7111g00003 ATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAATTCTCTAGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACTTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGCTGAAGGTGGAGCTTCCTCTCTGGGTCAGTCTCCTGGTTATTACTATCCTTCTCCCTGGAACAATGATCCACTTGGCGATGGTTATCACCGAGGTGACAATAATATGTGA 489 0.4601 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMAEGGASSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7111g00003 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 121 - -
Vium7111g00003 162 Coils Coil 89 109 - -
Vium7111g00003 162 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vium7111g00003 162 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7111g00003 Vium-Chr7111 48497 50463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7111g00003 4 113 AS2 family AT3G27650 85.455 8.95e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium7111g00003 LOB 8.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7111g00003 - - gmx:100306630 319.316