Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium710g00001 ATGACTCCTCCTGGAAGAAAAGCAACCATCAGGGAGTTTTATGCTATTATTCTGCCATCTCTTCAAAGACTTCATGGTAGCATGGAGAAGTTAAACATTTGTAAGAGCGGACATTCTAGCATAGAAAGCTCAAGTTATGGCAAGAAACTGATTGAAGGAGATGCAAAACCAATCCATGTGGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTACCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACAAATTGTCAGAGTCTTGCCCTTTTTGCCGTGGTACCTTAAGGAGAGTTAATTCTGAGGATCTGTGGGTACTAACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAGGAGGACTTGTTACGTTTCAACCTTTATATCAACAACCTACCAAAAGATCACCCGGATGCACTTTTCTTAATGTATTATGAGTATCTGATTTGA 495 0.396 MTPPGRKATIREFYAIILPSLQRLHGSMEKLNICKSGHSSIESSSYGKKLIEGDAKPIHVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNKLSESCPFCRGTLRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFNLYINNLPKDHPDALFLMYYEYLI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium710g00001 164 ProSiteProfiles Zinc finger RING-type profile. 68 106 IPR001841 -
Vium710g00001 164 Pfam Ring finger domain 66 106 IPR001841 -
Vium710g00001 164 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Vium710g00001 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 117 IPR013083 -
Vium710g00001 164 PANTHER RING FINGER PROTEIN 41, 151 5 162 - -
Vium710g00001 164 SUPERFAMILY RING/U-box 60 110 - -
Vium710g00001 164 SMART ring_2 68 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium710g00001 Vium-Chr710 228 1594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium710g00001 14 109 RAD5 or RAD16-like Gene Family AT5G05130 25.962 7.35e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium710g00001 - - vum:124821954 340.502