Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7102g00007 ATGGGGTGCTGCTTCAGTGCCCAGATCAAAGCTGAGAGCCCTCCACGCAACGGTTTGAGCTCAAAGGATGGTAACACAGAAGAGGATGGCTTAAGCGGCAAGATCTCCACTCCCTCCGTGCCTCCAACACCAAGGACAGAGGGTGAGATCTTGAAGTCCTCAAATATGAAAAGCTTCACCTTTGTTCAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGGTTTGGTCGTGTTTTTAAGGGGTGGATTGATGAGCAATCACTTGCACCAGTTAGACCAGGGACTGGATTGGTCATTGCTGTGAAGATGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATCACCAAAGGCTTTTGGTGTATGAGTTTTTGACAAAGGGAAGTTTGGATAATCATTTATTTAGGAGAGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCTAATATCTTACTTGATTCGAATTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATGAAAGCCATGTCTCTACAAGAGTAATGGGCACTTATGGCTATGCTGCTCCTGAATATATTGCCACAGGTCACTTGACAAAGAAGAGTGATGTCTACAGTTTTGGGGTTGTTCTGCTTGAAATCATGTCTGGCAAACGTGCCCTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATTGAATGGGCCAAACCATACCTCAGCAACAAACGCAGGATCTTCCAAGTCATGGATGCTCGCATCGAAGGCCAATACTCGACGCGCGAAGCCATGAAAGTAGCCAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAGCATTGGAGGAACTTCAGGATTCTGGTGAAAAAACTGTTGCAGGGGTGGGAAGCCATCGTCACCATCAAACTGGGAGGAGTGATCATAGCTCAAGAAGCAGTGGCTACAGACAACATAGAGGTAAACAACATGAAACAACAAAGTGA 1200 0.4542 MGCCFSAQIKAESPPRNGLSSKDGNTEEDGLSGKISTPSVPPTPRTEGEILKSSNMKSFTFVQLKTATRNFRPDSVVGEGGFGRVFKGWIDEQSLAPVRPGTGLVIAVKMLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDHQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDESHVSTRVMGTYGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSTREAMKVANLAIQCLSVEPRFRPKMDEVVRALEELQDSGEKTVAGVGSHRHHQTGRSDHSSRSSGYRQHRGKQHETTK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7102g00007 399 MobiDBLite consensus disorder prediction 359 399 - -
Vium7102g00007 399 PANTHER OS01G0588500 PROTEIN-RELATED 38 357 - -
Vium7102g00007 399 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Vium7102g00007 399 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Vium7102g00007 399 PIRSF TyrPK_CSF1-R 173 282 - -
Vium7102g00007 399 PIRSF TyrPK_CSF1-R 319 399 - -
Vium7102g00007 399 PIRSF TyrPK_CSF1-R 71 183 - -
Vium7102g00007 399 Gene3D Transferase(Phosphotransferase) domain 1 157 377 - -
Vium7102g00007 399 SUPERFAMILY Protein kinase-like (PK-like) 44 353 IPR011009 -
Vium7102g00007 399 MobiDBLite consensus disorder prediction 365 399 - -
Vium7102g00007 399 CDD STKc_IRAK 77 356 - -
Vium7102g00007 399 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7102g00007 399 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Vium7102g00007 399 FunFam Probable serine/threonine-protein kinase PBL8 157 372 - -
Vium7102g00007 399 MobiDBLite consensus disorder prediction 13 50 - -
Vium7102g00007 399 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Vium7102g00007 399 MobiDBLite consensus disorder prediction 1 50 - -
Vium7102g00007 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7102g00007 Vium-Chr7102 23749 27954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7102g00007 1 353 Glycoside Hydrolase AT3G07070 46.049 6.50e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium7102g00007 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7102g00007 - - gmx:100775335 723.776