Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7097g00001 ATGACCCTCATGAAAAGCATATGGAAATCCATCTTCCCGGGTTGTTACAAGGGTGAGTATCCATCTCCGAAGCCAAAGAAGGTGGTGGCTACAAAGCCAAATTCTTCGCACAGGATTTCTGTGACGGATTTGAGTTATCCAAGCACGACTCTTTCAGAGGATCTCTCCATTTCTCTGGCGGGGACCAACCTCCATGTTTTCTCACTTGCTGAGCTCAAGATCATCACGCAGTCTTTCTCTTCTAGCAACTTTCTAGGAGAAGGTGGATTCGGACCGGTGCATAAAGGGTTCATCGATGACAAGCTCAGGCATGGCCTTAAGGCTCAACCCGCGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGACCGAAGTTGTTTTTCTGGGGCAACTGAGGCATCCACATCTGGTGAAGCTGATAGGATACTGTTGTGAAGAAGAACACAGACTTTTGGTATATGAATATTTACCAAGAGGCAGCTTGGAGAATCAATTATTTAGAAGATTCACAGCATCACTACCATGGTCAACGAGAATGAAAATTGCTGTTGGTGCTGCCAAGGGTCTAGCCTTTCTTCACGAAGCCGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGACTCTGATTACAATGCAAAGCTATCAGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGTGATGACACCCACGTTTCAACCCGAGTAATGGGCACACATGGATACGCAGCCCCAGAATATGTGATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGGGTAGTGCTGTTGGAGTTGCTGACAGGGAGAAGGTCAGTGGACAAGAACCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCAATGCTGAATGATTCAAGGAAACTGAGTAGGATAATGGACCCTAGACTTGAAGGGCAGTATTCAGAAATGGGGACCAAAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGACCTAGGAGCAGACCCTCCATGAGCACAGTGGTTAAGACCCTTGAACCACTTCAGGATTTTGATGACATTCCAATGGGAACATTTGTTTACACTGCTCCACAAGATCATAACAATGAAGTGCATAGGGATGCAAAGGATCAATGTGAAACACCTAGAAGGAGGGAAAACGACAGCAATGGCCGACACCATCACAGGAACCGCAACCTTAACAGGCATCATCCTCTAAAGTCCCCAAAGAGCCCCAAGCCACAACAATCACACACACATTTACGTTCACCGAATCATCACAACAACAAACACAGAAATGGTAGACGAAGTGGATCAAACTCTCCTCCAGGAACCATTAATATATAG 1380 0.4645 MTLMKSIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTLSEDLSISLAGTNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPAAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLSRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKTLEPLQDFDDIPMGTFVYTAPQDHNNEVHRDAKDQCETPRRRENDSNGRHHHRNRNLNRHHPLKSPKSPKPQQSHTHLRSPNHHNNKHRNGRRSGSNSPPGTINI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7097g00001 459 FunFam Probable serine/threonine-protein kinase PBL8 162 376 - -
Vium7097g00001 459 MobiDBLite consensus disorder prediction 378 405 - -
Vium7097g00001 459 CDD STKc_IRAK 85 359 - -
Vium7097g00001 459 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Vium7097g00001 459 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7097g00001 459 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Vium7097g00001 459 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
Vium7097g00001 459 PANTHER OS01G0588500 PROTEIN-RELATED 45 360 - -
Vium7097g00001 459 Gene3D Phosphorylase Kinase; domain 1 43 161 - -
Vium7097g00001 459 MobiDBLite consensus disorder prediction 406 420 - -
Vium7097g00001 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vium7097g00001 459 MobiDBLite consensus disorder prediction 373 459 - -
Vium7097g00001 459 Gene3D Transferase(Phosphotransferase) domain 1 162 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7097g00001 Vium-Chr7097 1217 4109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7097g00001 65 356 Glycoside Hydrolase AT3G07070 53.559 9.47e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium7097g00001 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7097g00001 - - gmx:100797003 803.512