Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7093g00007 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGTGGAAGAAGTTTTGGCTGAAGCACAGGTTGAATCAGAAGTTTTGGCTGCTCCTTTGTCCGTTAGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTCTGGAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATAAAATAGAGTCGATCCCTGTAATGGAAAATGTTCCGGTTTTAAATAAAACTGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGAAGAACTTCCTCAGAGTGATAAGGACGTAGCGAATGATTCTAATGTTTGTCAAAACAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTCGAAGCGGCTGAAAGTAAAACTTGCAATAATGGGGACTCCAACTCCGCACACCCCATTCATAACGAACCTAAAACGCCTCATGTTGTTCAGACCGATATAAGAGCTGAAGTTAAGAGTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCAAATGCAGATAATGGAAACTTGATCTCACCAAACTTGTATTTTCTGGATCCTGAGTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTTAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTAAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATATTGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGTAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTCCTCACAGTAATAAACCATCTAAACCACAACTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAACATTCTGACAATCCATGGGGGGTCACACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTTACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1533 0.424 MSDTKENEEAGQNVPLAVEEVLAEAQVESEVLAAPLSVRDTSNHAENGKVEAEAPLEDRIVKPEANSECIPQQDVLNSQNKIESIPVMENVPVLNKTEGENALDVKSKVEELPQSDKDVANDSNVCQNNADPAEMTVEVKPKAFEAAESKTCNNGDSNSAHPIHNEPKTPHVVQTDIRAEVKSGLDDENKYNERQAAVANADNGNLISPNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNIENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVPHSNKPSKPQLDTSVVDIGPPADWVKINVQKTVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7093g00007 510 SMART ARID_2 225 315 - -
Vium7093g00007 510 MobiDBLite consensus disorder prediction 406 429 - -
Vium7093g00007 510 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Vium7093g00007 510 CDD ARID 230 315 - -
Vium7093g00007 510 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Vium7093g00007 510 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Vium7093g00007 510 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Vium7093g00007 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 86 509 IPR045147 GO:0006357
Vium7093g00007 510 SMART bright_3 229 320 IPR001606 GO:0003677
Vium7093g00007 510 Gene3D - 228 326 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7093g00007 Vium-Chr7093 61019 70468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7093g00007 212 508 ARID Transcription Factor Family AT1G76510 56.508 1.26e-111 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium7093g00007 ARID 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7093g00007 - - gmx:100803374 781.941