Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7093g00005 ATGGGTCTCTGCTTCTCCGGTGTTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATCCAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGGAACCACCACAACCACCACGGTCACAAAGAGTAGGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTAAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTTGGTGGGTTCGGCAGACTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCATGCTTTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTCTCAAGGGTTTTCAGAGTGGCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGTTATTGGGGTACTGTTGGGACGAAGATCAGTTTCTTCTTGTGTATGAGTACATGCCAAAGAGAAGCTTCGAGCGTCATCTCTTCGAAAGAAATCATGAACCACTTACGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGCCATATTCAGAGATTTCAAGACCTCAAATGTACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACTTGTAAATACCCTGGGCATCTATGGTAATGCTGCACCAGAATATCTCGCAACAGGCATGAGAGCATTTGACAGAAGAAGGCCATCAGGGCAGCAGGACCTGGTTGAATGGACCAAGCCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATACAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCGAAAATGCCTAAAGGTTGACCATACTCAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCTATTGAAGATGTCCATGGAAGATACCCAACTCATACTCAATTACGTTTTCTATATGTTTGA 1095 0.4566 MGLCFSGVPSLHSSSLNRPHYPGSSDIHGSNVEFSGTTTTTTVTKSRFSVREGIDSECSPLPFPGGQILKWPELKVFSFEELKSATGNFKSDRLVGGFGRLYKGWLDENTLTPAKPCFGVEVAIKMFNPESSQGFSEWQSEINVLGRLSHPNVVRLLGYCWDEDQFLLVYEYMPKRSFERHLFERNHEPLTWNTRLKIVIGAARGLAFLHANENKAIFRDFKTSNVLLDGNYNAKIADFGLAKGLPGEQSLVNTLGIYGNAAPEYLATGMRAFDRRRPSGQQDLVEWTKPCLSSKKKLKTIMDGKIQGQYSPKAALQAAQLARKCLKVDHTQRPSMKEVLEGLEAIEDVHGRYPTHTQLRFLYV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7093g00005 364 Pfam Protein kinase domain 121 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7093g00005 364 PANTHER OS01G0588500 PROTEIN-RELATED 43 346 - -
Vium7093g00005 364 Gene3D Transferase(Phosphotransferase) domain 1 173 267 - -
Vium7093g00005 364 Gene3D Transferase(Phosphotransferase) domain 1 268 357 - -
Vium7093g00005 364 SUPERFAMILY Protein kinase-like (PK-like) 70 348 IPR011009 -
Vium7093g00005 364 FunFam Os07g0541700 protein 173 260 - -
Vium7093g00005 364 ProSiteProfiles Protein kinase domain profile. 87 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7093g00005 364 MobiDBLite consensus disorder prediction 1 22 - -
Vium7093g00005 364 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Vium7093g00005 364 FunFam Serine/threonine-protein kinase BIK1 63 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7093g00005 Vium-Chr7093 47462 50047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7093g00005 75 343 Glycoside Hydrolase AT3G07070 39.597 1.61e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium7093g00005 Pkinase 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7093g00005 - - vum:124825635 504.212