Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7093g00004 ATGGGTCTCTGCTTCTCCGGTGTTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATCCAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGGAACCACCACAACCACCACGGTCACAAAGAGTAGGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTAAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTTGGTGGGTTCGGCAGACTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCATGCTTTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTCTCAAGGGTTTTCAGAGTGGCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGTTATTGGGGTACTGTTGGGACGAAGATCAGTTTCTTCTTGTGTATGAGTACATGCCAAAGAGAAGCTTCGAGCGTCATCTCTTCGAAAGAAATCATGAACCACTTACGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGCCATATTCAGAGATTTCAAGACCTCAAATGTACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACTTGTAAATACCCTGGGCATCTATGGTAATGCTGCACCAGAATATCTCGCAACAGGGAAGTTGTATACGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTGACAGGCATGAGAGCATTTGACAGAAGAAGGCCATCAGGGCAGCAGGACCTGGTTGAATGGACCAAGCCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATACAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCGAAAATGCCTAAAGGTTGACCATACTCAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCTATTGAAGATGTCCATGGAAGATACCCAACTCATACTCAATTACGTTTTCTATATGTTTGA 1158 0.4542 MGLCFSGVPSLHSSSLNRPHYPGSSDIHGSNVEFSGTTTTTTVTKSRFSVREGIDSECSPLPFPGGQILKWPELKVFSFEELKSATGNFKSDRLVGGFGRLYKGWLDENTLTPAKPCFGVEVAIKMFNPESSQGFSEWQSEINVLGRLSHPNVVRLLGYCWDEDQFLLVYEYMPKRSFERHLFERNHEPLTWNTRLKIVIGAARGLAFLHANENKAIFRDFKTSNVLLDGNYNAKIADFGLAKGLPGEQSLVNTLGIYGNAAPEYLATGKLYTKSDVYGFGVVLLEILTGMRAFDRRRPSGQQDLVEWTKPCLSSKKKLKTIMDGKIQGQYSPKAALQAAQLARKCLKVDHTQRPSMKEVLEGLEAIEDVHGRYPTHTQLRFLYV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7093g00004 385 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Vium7093g00004 385 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 374 - -
Vium7093g00004 385 ProSiteProfiles Protein kinase domain profile. 87 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7093g00004 385 Gene3D Transferase(Phosphotransferase) domain 1 173 378 - -
Vium7093g00004 385 MobiDBLite consensus disorder prediction 1 22 - -
Vium7093g00004 385 PANTHER OS01G0588500 PROTEIN-RELATED 44 367 - -
Vium7093g00004 385 FunFam Serine/threonine-protein kinase BIK1 63 172 - -
Vium7093g00004 385 SUPERFAMILY Protein kinase-like (PK-like) 70 369 IPR011009 -
Vium7093g00004 385 Pfam Protein tyrosine and serine/threonine kinase 96 363 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7093g00004 Vium-Chr7093 47459 50048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7093g00004 75 364 Glycoside Hydrolase AT3G07070 44.631 3.17e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium7093g00004 PK_Tyr_Ser-Thr 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7093g00004 - - vum:124825635 552.747