Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium708g00003 ATGGAAGAAGGTTTAGGAGACTGCTGTTCCTCCAACTCCACCACCACCAGGAAAACCCAGAAACGGAAGCAGCAACAACACCAAGACAAACCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCCAGGATCTGGCTGGGTTCTTACGCCACCCCTGTCGCTGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCTTCCGCCCGCCTCAATTTCCCCGAACTGTTGTTCCAAGACGACGACGTCTCAACCCAAGAGGGCAACATGTCCGCTGATTGTATACGCAAGAAAGCGACCCAAGTCGGCGCGAGAGTCGACGCGCTCCAAACCGCGCTTCAATCATCGTCGTCCCACTCCGCTAATTCCAGCCACGTCAGCTATGCCAAACCAGACTTGAACGAGTATCCAAAACCCGAAGATTAG 468 0.5513 MEEGLGDCCSSNSTTTRKTQKRKQQQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLFQDDDVSTQEGNMSADCIRKKATQVGARVDALQTALQSSSSHSANSSHVSYAKPDLNEYPKPED 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium708g00003 155 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Vium708g00003 155 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Vium708g00003 155 MobiDBLite consensus disorder prediction 125 143 - -
Vium708g00003 155 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Vium708g00003 155 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 155 - -
Vium708g00003 155 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Vium708g00003 155 MobiDBLite consensus disorder prediction 1 32 - -
Vium708g00003 155 MobiDBLite consensus disorder prediction 125 155 - -
Vium708g00003 155 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Vium708g00003 155 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Vium708g00003 155 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Vium708g00003 155 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vium708g00003 155 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium708g00003 Vium-Chr708 35405 36480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium708g00003 28 130 AP2-EREBP Transcription Factor Family AT5G67190 73.832 1.05e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium708g00003 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium708g00003 K09286 - gmx:732579 250.366