Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7074g00008 GAAGGAGGCTTTGGCAGTGTGTACTGGGGCCAACTATGGGATGGATCGCAAATTGCGGTGAAAAGTTTGAAGTTTCAGAGCAACATAACTGAAACATTTACGGTTGAACTTGAAATCTTGGCAAGAATACGACACCAGAATCTTCTCAGTCTTCGTGGCTACTGTGCAGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCAAAATCTGAGTCTCCACTCTCATCTTCACGGACATCATTCATTCGAATGCTCTCTGGATTGGAATCGTCGGATGAATATCGCAATTGGTTCCGCTGAAGGAATTGCGTACCTTCACCACCAAGCAACACCACGTATCATCCACAGGGATATTAAATCAAGCAATGTGTTGCTAGATTCTAATTTCAAGGCCAGGGTTGCTGATTTTGGGTTTGCTAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAAAGTTATGGGAACTCGTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAACGAGAGTTGTGATGTGTACAGTTTTGGTGTTCTTCTTCTAGAACTCGCTAGTGGCATAAGACCAACCGAAATGCTTGATTCCACTGTGAGGAGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTAATAAAATTGCTGATCCAAGACTAAATGGTAACTATGTGAAGGAAGAGCTTAAAAGAGTTGTTTTAGTTGCTCTTATTTGTGCTCAGGATCTACCTGAGAAGAGACCATCCATGCTTGATGTGGTAGAACTACTCAAGGGAGAGTCTAAGGATAAATTTTCTGATTTAGAGAACAGTGACATGTTCAGAAGTCGTCTTGCTGCTGCTGGAACTTCAGAGGCTAAAGATAGTTTAGACTACATCTCAGAAGAAAAAGAATTAGAACATCCGCTGAGAAAGAATGCTTCGTGTTTTTTTGCTATTGTTGCAATTTTCAAGTCAACACTCGAAGCCCTTTTTTAG 996 0.4137 EGGFGSVYWGQLWDGSQIAVKSLKFQSNITETFTVELEILARIRHQNLLSLRGYCAEGQERLIVYEYMQNLSLHSHLHGHHSFECSLDWNRRMNIAIGSAEGIAYLHHQATPRIIHRDIKSSNVLLDSNFKARVADFGFAKLIPDGATHVTTKVMGTRGYLAPEYAMLGKANESCDVYSFGVLLLELASGIRPTEMLDSTVRRSIVDWALPLVCEKKFNKIADPRLNGNYVKEELKRVVLVALICAQDLPEKRPSMLDVVELLKGESKDKFSDLENSDMFRSRLAAAGTSEAKDSLDYISEEKELEHPLRKNASCFFAIVAIFKSTLEALF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7074g00008 331 FunFam PTI1-like tyrosine-protein kinase At3g15890 68 279 - -
Vium7074g00008 331 Pfam Protein kinase domain 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7074g00008 331 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7074g00008 331 Gene3D Transferase(Phosphotransferase) domain 1 69 281 - -
Vium7074g00008 331 PANTHER OS01G0750732 PROTEIN 1 273 - -
Vium7074g00008 331 SMART serkin_6 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7074g00008 331 Gene3D Phosphorylase Kinase; domain 1 1 68 - -
Vium7074g00008 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Vium7074g00008 331 SUPERFAMILY Protein kinase-like (PK-like) 1 263 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7074g00008 Vium-Chr7074 34650 36557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7074g00008 1 259 Trihelix Transcription Factor Family AT1G68690 49.621 1.08e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vium7074g00008 Pkinase 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7074g00008 - - vum:124844621 655.981