Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7072g00002 ATGCCTCTTTCCAGAAAATCTCTTTCCACCGGAGCCCACCCCAACGATGCCGGACCCGACGACTGCACTCCACCGCGGCGGTTGACCAGGCAGAGGAAGCTCCGCCACCTTAGCGACCATGACATTGGCTTCTCATTCTTCCACTCCACCGACTCTTTTTCTGCCTCGCCGGAGCCCCGCTACCACTGCGCTTCTGAACTCCGCTCCCTCTCTAGTCTGCCACAACCGCTTCCTCTCCCTGAAGCGCCGTTGACCCGTCGAGCCAAGTCAGTCAGCTCCGGTTCCGTACATCCTACCCTCTCTGCTTCCGTAGAACATCCTAATTTTTCTTCTTCCGGGAAGGCGTTGGCTCATGATGCAGTGACACGTGAAAAACCTACACTCCATTTGGATTCTACTCCTGCAAATGCAAAATACAATCTGAGAGAGCATATTCCTGCAGCAAGTTTCTTGACAGGCCATAGTTCACTGAAAAATCGAAGAGCAGCATCTCATGGTAATGACTCTGAAGTTAATCCCCACTTGAATTTGGGTGTTGTTGCCAAGCCCAAGAGTGCTCCAACAAGTGTGGTCACTAGTCCTGATACTAGTCCATATAGATCAAATAACATAGACTTCTTTGATTCTACCTTCAACTTCTCTTCAGAAGTTAATGACAAATTGAAAATGTTATCAGCTAAAAGTGTACATAGTCCAGACCATTCCCTTATTCATTGTCCTCTAGGCCTCACTCGTTACTTCAATCCTAAAATTGAGGAGGGATCTCAGAACCATAAATTTTTGTCCAAGGTGTGCCCTGAAAATAACCATGTTGATGCACATCCCTTGCCTCTTCCTCCTAGAGCTTCATCTCCTGCACAATTATCTGTGCTGCATCAATCAAGTTCCATCCATCACGCTACTGAAACTATGCCTTCAGTCAAAGGTCAATGGCAGAAAGGAAAACTTATCGGACGAGGAACCTTTGGAAGTGTTTTTCATGCAACCAACCTGGAAAATGGAGCCTCGTGTGCAATGAAGGAGGTTAATTTAATTCCTGATGATCCTACATCTGCTGAGTGCATGAAACAACTGGACCAGGAAATCAAAATTCTTCATCAACTAAACCACCCCAACATTGTGCGGTATTACGGAAGTGAAATAGTTGGCAATCATTTGTACATATATATGGAATATGTCCATCCGGGATCAATCAGTAAATTTATGCGTGAGCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACCAGGCATATTCTCTCTGGTTTAGCTTACTTACACAGTAACAAAACCATCCACAGAGATATTAAAGGTGCAAACTTGCTGGTCAATGAATCCGGCATTGTGAAACTTGCAGATTTTGGGCTAGCGAAAATTCTGACGGGGAATTCATATGATCTTTCTCTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCTAATCTTGATGTTGTCACGGGAATTGACATATGGAGCTTAGGGTGCACCATTATAGAGATGTTAACAGGCAAACCTCCTTGGAGTGAAACTGAAGGGGCTTCAGCCATGTTCAAGGCACTGCAAGAGTCCCCTCCTATACCTGAAACATTATCATCAGCGGGAAAGGATTTCCTCCAAAAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTTCATCAACTCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGATCAAGATGTTCTAGGTCATCCACAATCCTTTCCTAGGGGAGACCTTGGACCAGGAGGAAATTCAGCTAGTCCTAGAGACACCACCACCACCAGAAGTGGCATAATTCAAGCCTCCAGTAGCTCACGGTGTTTTAACAAGATTCAGAAACTAGTGGGTGATACTTCCGAACAAATCAATGACCACAGGGAGTCTAATCATATTATACCTTTTAGTCACTCTCATGTTCCAGAAGTGAAGATTCTTCAATCTACATTGAAACCTGGTACCCTCAATTACGTGTCTGCTGAAAATTCCAGAAACATTTCCACCATGATGAGAATGATCACAAACTTCTGA 2067 0.4461 MPLSRKSLSTGAHPNDAGPDDCTPPRRLTRQRKLRHLSDHDIGFSFFHSTDSFSASPEPRYHCASELRSLSSLPQPLPLPEAPLTRRAKSVSSGSVHPTLSASVEHPNFSSSGKALAHDAVTREKPTLHLDSTPANAKYNLREHIPAASFLTGHSSLKNRRAASHGNDSEVNPHLNLGVVAKPKSAPTSVVTSPDTSPYRSNNIDFFDSTFNFSSEVNDKLKMLSAKSVHSPDHSLIHCPLGLTRYFNPKIEEGSQNHKFLSKVCPENNHVDAHPLPLPPRASSPAQLSVLHQSSSIHHATETMPSVKGQWQKGKLIGRGTFGSVFHATNLENGASCAMKEVNLIPDDPTSAECMKQLDQEIKILHQLNHPNIVRYYGSEIVGNHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNESGIVKLADFGLAKILTGNSYDLSLKGSPYWMAPEVVKGSIKNESNLDVVTGIDIWSLGCTIIEMLTGKPPWSETEGASAMFKALQESPPIPETLSSAGKDFLQKCFQRDPADRPSSSTLLKHAFVQNLHDQDVLGHPQSFPRGDLGPGGNSASPRDTTTTRSGIIQASSSSRCFNKIQKLVGDTSEQINDHRESNHIIPFSHSHVPEVKILQSTLKPGTLNYVSAENSRNISTMMRMITNF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7072g00002 688 SUPERFAMILY Protein kinase-like (PK-like) 291 604 IPR011009 -
Vium7072g00002 688 FunFam Mitogen-activated protein kinase kinase kinase 5 308 609 - -
Vium7072g00002 688 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
Vium7072g00002 688 ProSiteProfiles Protein kinase domain profile. 311 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7072g00002 688 SMART serkin_6 311 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7072g00002 688 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 96 585 - -
Vium7072g00002 688 MobiDBLite consensus disorder prediction 1 26 - -
Vium7072g00002 688 MobiDBLite consensus disorder prediction 88 110 - -
Vium7072g00002 688 Gene3D Transferase(Phosphotransferase) domain 1 308 586 - -
Vium7072g00002 688 MobiDBLite consensus disorder prediction 580 611 - -
Vium7072g00002 688 MobiDBLite consensus disorder prediction 71 117 - -
Vium7072g00002 688 Pfam Protein kinase domain 312 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7072g00002 Vium-Chr7072 1431 8723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7072g00002 272 574 MAP Kinase Kinase Kinase AT5G66850 65.017 2.54e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium7072g00002 Pkinase 9.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7072g00002 - - gmx:100819530 1023.08