Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7072g00001 ATGCCTCTTTCCAGAAAATCTCTTTCCACCGGAGCCCACCCCAACGATGCCGGACCCGACGACTGCACTCCACCGCGGCGGTTGACCAGGCAGAGGAAGCTCCGCCACCTTAGCGACCATGACATTGGCTTCTCATTCTTCCACTCCACCGACTCTTTTTCTGCCTCGCCGGAGCCCCGCTACCACTGCGCTTCTGAACTCCGCTCCCTCTCTAGTCTGCCACAACCGCTTCCTCTCCCTGAAGCGCCGTTGACCCGTCGAGCCAAGTCAGTCAGCTCCGGTTCCGTACATCCTACCCTCTCTGCTTCCGTAGAACATCCTAATTTTTCTTCTTCCGGGAAGGCGTTGGCTCATGATGCAGTGACACGTGAAAAACCTACACTCCATTTGGATTCTACTCCTGCAAATGCAAAATACAATCTGAGAGAGCATATTCCTGCAGCAAGTTTCTTGACAGCTGTTGTAAATACAGGCCATAGTTCACTGAAAAATCGAAGAGCAGCATCTCATGGTAATGACTCTGAAGTTAATCCCCACTTGAATTTGGGTGTTGTTGCCAAGCCCAAGAGTGCTCCAACAAGTGTGGTCACTAGTCCTGATACTAGTCCATATAGATCAAATAACATAGACTTCTTTGATTCTACCTTCAACTTCTCTTCAGAAGTTAATGACAAATTGAAAATGTTATCAGCTAAAAGTGTACATAGTCCAGACCATTCCCTTATTCATTGTCCTCTAGGCCTCACTCGTTACTTCAATCCTAAAATTGAGGAGGGATCTCAGAACCATAAATTTTTGTCCAAGGTGTGCCCTGAAAATAACCATGTTGATGCACATCCCTTGCCTCTTCCTCCTAGAGCTTCATCTCCTGCACAATTATCTGTGCTGCATCAATCAAGTTCCATCCATCACGCTACTGAAACTATGCCTTCAGTCAAAGGTCAATGGCAGAAAGGAAAACTTATCGGACGAGGAACCTTTGGAAGTGTTTTTCATGCAACCAACCTGGAAAATGGAGCCTCGTGTGCAATGAAGGAGGTTAATTTAATTCCTGATGATCCTACATCTGCTGAGTGCATGAAACAACTGGACCAGGAAATCAAAATTCTTCATCAACTAAACCACCCCAACATTGTGCGGTATTACGGAAGTGAAATAGTTGGCAATCATTTGTACATATATATGGAATATGTCCATCCGGGATCAATCAGTAAATTTATGCGTGAGCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACCAGGCATATTCTCTCTGGTTTAGCTTACTTACACAGTAACAAAACCATCCACAGAGATATTAAAGGTGCAAACTTGCTGGTCAATGAATCCGGCATTGTGAAACTTGCAGATTTTGGGCTAGCGAAAATTCTGACGGGGAATTCATATGATCTTTCTCTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCTAATCTTGATGTTGTCACGGGAATTGACATATGGAGCTTAGGGTGCACCATTATAGAGATGTTAACAGGCAAACCTCCTTGGAGTGAAACTGAAGGGGCTTCAGCCATGTTCAAGGCACTGCAAGAGTCCCCTCCTATACCTGAAACATTATCATCAGCGGGAAAGGATTTCCTCCAAAAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTTCATCAACTCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGATCAAGATGTTCTAGGTCATCCACAATCCTTTCCTAGGGGAGACCTTGGACCAGGAGGAAATTCAGCTAGTCCTAGAGACACCACCACCACCAGAAGTGGCATAATTCAAGCCTCCAGTAGCTCACGGTGTTTTAACAAGATTCAGAAACTAGTGGGTGATACTTCCGAACAAATCAATGACCACAGGGAGTCTAATCATATTATACCTTTTAGTCACTCTCATGTTCCAGAAGTGAAGATTCTTCAATCTACATTGAAACCTGGTACCCTCAATTACGTGTCTGCTGAAAATTCCAGAAACATTTCCACCATGATGAGAATGATCACAAACTTCTGA 2082 0.4452 MPLSRKSLSTGAHPNDAGPDDCTPPRRLTRQRKLRHLSDHDIGFSFFHSTDSFSASPEPRYHCASELRSLSSLPQPLPLPEAPLTRRAKSVSSGSVHPTLSASVEHPNFSSSGKALAHDAVTREKPTLHLDSTPANAKYNLREHIPAASFLTAVVNTGHSSLKNRRAASHGNDSEVNPHLNLGVVAKPKSAPTSVVTSPDTSPYRSNNIDFFDSTFNFSSEVNDKLKMLSAKSVHSPDHSLIHCPLGLTRYFNPKIEEGSQNHKFLSKVCPENNHVDAHPLPLPPRASSPAQLSVLHQSSSIHHATETMPSVKGQWQKGKLIGRGTFGSVFHATNLENGASCAMKEVNLIPDDPTSAECMKQLDQEIKILHQLNHPNIVRYYGSEIVGNHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNESGIVKLADFGLAKILTGNSYDLSLKGSPYWMAPEVVKGSIKNESNLDVVTGIDIWSLGCTIIEMLTGKPPWSETEGASAMFKALQESPPIPETLSSAGKDFLQKCFQRDPADRPSSSTLLKHAFVQNLHDQDVLGHPQSFPRGDLGPGGNSASPRDTTTTRSGIIQASSSSRCFNKIQKLVGDTSEQINDHRESNHIIPFSHSHVPEVKILQSTLKPGTLNYVSAENSRNISTMMRMITNF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7072g00001 693 MobiDBLite consensus disorder prediction 1 28 - -
Vium7072g00001 693 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 96 590 - -
Vium7072g00001 693 FunFam Mitogen-activated protein kinase kinase kinase 5 313 614 - -
Vium7072g00001 693 Pfam Protein kinase domain 317 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7072g00001 693 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524
Vium7072g00001 693 MobiDBLite consensus disorder prediction 88 110 - -
Vium7072g00001 693 MobiDBLite consensus disorder prediction 585 616 - -
Vium7072g00001 693 Gene3D Transferase(Phosphotransferase) domain 1 313 591 - -
Vium7072g00001 693 MobiDBLite consensus disorder prediction 72 117 - -
Vium7072g00001 693 ProSiteProfiles Protein kinase domain profile. 316 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7072g00001 693 SUPERFAMILY Protein kinase-like (PK-like) 296 609 IPR011009 -
Vium7072g00001 693 SMART serkin_6 316 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7072g00001 Vium-Chr7072 1430 8723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7072g00001 276 579 MAP Kinase Kinase Kinase AT5G66850 64.803 2.17e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium7072g00001 Pkinase 9.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7072g00001 - - gmx:100819530 1016.91