Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7071g00001 ATGCAAATTCAGAGAAAAAACCGAAACAAACGACCACTCCGAACACAACATATTTCTATCTTCGGCAGAATGTTCGTGTTTTTTCTTTTCTTCCTCTTCCTTCTCTCTCCTCCGCGATTTTCTCTCTCTCTAACCCAAGACGGCCTTTTCCTCCTCGAGGCGCGCAGCAGCATCTCCGACCCCCAGAACTCACTCTCCTCCTGGAACCCCGCCGCCTCCACCCCCTGCCAGTGGAGGGGCGTCACCTGCAACAATCATTCCGCCGCCGTCATCGCCATCGATCTCTCTTACTCCTTCCTCTCCGGCCCCTTCCCCGCCGCCCTCTGCCGCCTCCCCTCCCTCTCTTCCCTCAACCTCTCTTACAACCTCATCAACTCCACCCTCTCCGCCGTCTCTCTCTGCCGCTCCCTCCTCCATCTCGACCTCTCCCAAAACGCCCTTGTGGGTCCCATCGACTCCCTCGCCGCACTCACCTCCCTCCTCCATCTCGACCTCTCCCAAAACGCCCTTGTGGGTCCCATCGACTCCCTCGCCGCACTCACCTCCCTCCGCTACCTCGACCTCTCCGGCAACAACCTCTCCGGAGAAATTCCCGAGACCCTCGCCGCCCTACCCCACCTCGAAACGCTCAACCTCGTTAGCAATCTTCTCACAGGTACCATCCCCGCTTCACTCGGTAACCTTACTTCGCTGAAACGCCTTCAACTTGCTTACAACTTGTTCAAGCCGGGTCCCATGCCGAGTGAACTCGGGAAACTCGGAAACCTTGAAACGCTTTTTCTCGCTCTGTGCAACCTTCAAGGTCCCATTCCAGACACCTTCAGTAATCTCGTTAACTTGACAAGCCTCGACTTGTCTCAGAACAGCATCACCGGTAACATTCCGCAATGGTTCACGCGTTTAACGCGCGTGACCCAAATTGAGCTTTACCAAAACTCGCTCTCTGGGGAGCTACCCAGAGGAATGTCGAAGATGACGAGTTTGAAACTATTTGACGCGTCCAGGAACGAGTTGACTGGGACGATTCCGACCGAATTGTGTGAGTTGCCACTCCAGTCACTGAATTTATTTGAGAACAAACTCGAAGGGTTTTTGCCAGGGGCCATTGCGCGTTCCCCGAACCTCTCTGAACTCAAACTTTTCAGTAACAGACTTATTGGAACGTTGCCGAGTGATTTGGGCAGTAACTCACCGTTGAACCATATTGACGTTTCGTATAACCGGTTTTACGGTGAAATTCCGGCGAACATTTGCCGGCGGGGCCAGCTTGAGCAGCTAATCTTGATATACAATTCGTTTTCGGGTGAAATTCCCGAGAGTCTCGGGAAATGCAAGAGTTTAATGAGGGTTCGGTTAAGAAACAATAATCTATCGGGAAGTGTTCCTGAAGGGGTTTGGAGTTTGCCCCGTTTGCATTTGCTTGAGCTTTTGGAAAATCACTTTTCTGGGCACATTTCTAAGGCGATTTCTGGCTCTTCCAGCTTGTCAAATTTGTTGCTTTCAAATAACCGGTTTTCTGGGTCGATTCCTGGGGAAATCGGGTTATTGGACAATCTTGTGGAGTTTGCTGCTAGTAATAATAATCTCTCGGGTCAGATTCCAGGGAGTATGGTGAAGTTGAAGCAGTTGGTTAATCTCGACCTTAGTTCTAATAATCTTTCTGGTGATCTTAATTTTGGTGGAATTGGTTACTTGAGTAAGGTCACTGACCTTAATCTGTCACATAATAGGTTGGATGGAAATGTTCCAAGTGAATTAGGAAGCTTTCCTGTGCTTAATTATCTTGATCTTTCTTGGAACAATTTCTCGGGGGAGATCCCATTGCAGTTGCAAAATTTGAGACTATCTGAGCTGAATTTGTCTTACAACCAGCTTTCTGGGGACATTCCTCCTCTTTATGCCAATGCCAAGTACAAAACGAGTTTTATAGGGAATCCTGGTCTCTGTAGTCATCTCCCAGGGCTTTGTAATAGTTATAGTAGGAATAAGAACTGGAGGCACACGTGGATTTTATGGTCCATTTTTGTGCTTGCTGGAGTTGTGTTCATTATTGGAGTGGCTTGGTTTTACTTGAGGTACAGGAAGGTGAAGAAATTGAAGAAAAGGTTATGCACTTCGAGTTGGAAGTCGTTTCACAAGCTGCAGTTTAGTGGGTTAGAGGTTGCTAAGTTGCTGAATGAGGCCAATGTGATAGGAAAGGGAGCATCCGGGAAGGTGTACAAGGTGGTGCTCAGCAACGGTGAGGTGGTGGCAGTGAAAAAAATGAGTGTAGGAGCCCCAAAGAAAGTGGATGAAAATGGTGGTTCCAGAAAAGATGAATTTGATGCTGAAGTAGAAGCACTGGGGAGGATCAGGCACAAGAATATTGTGAGGTTGTGGTGTTGCTGCAACAGTGGGAACGACAAGCTTTTGGTTTTTGAATACATGCCAAATGGGAGCTTGGGTGATTTGTTACAGGGTAGCAAGAAGAGCTTGTTGGATTGGCCTAAAAGGTGTAAAATTGCTGTTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGATTGTGTCCCACCGATTGTCCACAGGGATGTGAAATCTAACAATATATTGGTTGATGAGGATTTTGCTGCAAAAGTTGCAGATTTTGGTGTTGCCAAAATGGTGACAAAAGCCGGCCAAGGGACAGAATCAATGTCTGTTATTGCAGGATCATACGGCTACATTGCACCAGAATACGCATACACTCTGAGGGTGACCGAGAAGTGTGACATATACAGTTTTGGAGTGGTGATTTTGGAGTTGGTAACTGGGAGACCCCCCATTGATACAGAGTATGGTGAAAATGGTTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGAGTGGATCATGTAGTTGATCCTACGTTGGACTACAGATTCAGGGAAGAAATAAGCAAGGTGTTGAGTGTAGGTCTGCAGTGCACCAGCTCCAACCCAATAACTCGCCCCACAATGAGAAAAGTGGTTAAAATGCTTCGTGAGGTTACAGCAGTGCCCAAACGCACAAGTGTAAACGATGGAAATGAATGA 3057 0.4776 MQIQRKNRNKRPLRTQHISIFGRMFVFFLFFLFLLSPPRFSLSLTQDGLFLLEARSSISDPQNSLSSWNPAASTPCQWRGVTCNNHSAAVIAIDLSYSFLSGPFPAALCRLPSLSSLNLSYNLINSTLSAVSLCRSLLHLDLSQNALVGPIDSLAALTSLLHLDLSQNALVGPIDSLAALTSLRYLDLSGNNLSGEIPETLAALPHLETLNLVSNLLTGTIPASLGNLTSLKRLQLAYNLFKPGPMPSELGKLGNLETLFLALCNLQGPIPDTFSNLVNLTSLDLSQNSITGNIPQWFTRLTRVTQIELYQNSLSGELPRGMSKMTSLKLFDASRNELTGTIPTELCELPLQSLNLFENKLEGFLPGAIARSPNLSELKLFSNRLIGTLPSDLGSNSPLNHIDVSYNRFYGEIPANICRRGQLEQLILIYNSFSGEIPESLGKCKSLMRVRLRNNNLSGSVPEGVWSLPRLHLLELLENHFSGHISKAISGSSSLSNLLLSNNRFSGSIPGEIGLLDNLVEFAASNNNLSGQIPGSMVKLKQLVNLDLSSNNLSGDLNFGGIGYLSKVTDLNLSHNRLDGNVPSELGSFPVLNYLDLSWNNFSGEIPLQLQNLRLSELNLSYNQLSGDIPPLYANAKYKTSFIGNPGLCSHLPGLCNSYSRNKNWRHTWILWSIFVLAGVVFIIGVAWFYLRYRKVKKLKKRLCTSSWKSFHKLQFSGLEVAKLLNEANVIGKGASGKVYKVVLSNGEVVAVKKMSVGAPKKVDENGGSRKDEFDAEVEALGRIRHKNIVRLWCCCNSGNDKLLVFEYMPNGSLGDLLQGSKKSLLDWPKRCKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILVDEDFAAKVADFGVAKMVTKAGQGTESMSVIAGSYGYIAPEYAYTLRVTEKCDIYSFGVVILELVTGRPPIDTEYGENGLVKWVSSALEHEGVDHVVDPTLDYRFREEISKVLSVGLQCTSSNPITRPTMRKVVKMLREVTAVPKRTSVNDGNE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7071g00001 1018 SUPERFAMILY L domain-like 56 361 - -
Vium7071g00001 1018 Gene3D Transferase(Phosphotransferase) domain 1 809 1015 - -
Vium7071g00001 1018 ProSitePatterns Protein kinases ATP-binding region signature. 731 762 IPR017441 GO:0005524
Vium7071g00001 1018 SMART serkin_6 725 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7071g00001 1018 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 49 255 - -
Vium7071g00001 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Vium7071g00001 1018 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Vium7071g00001 1018 Gene3D Ribonuclease Inhibitor 243 350 IPR032675 -
Vium7071g00001 1018 SMART LRR_typ_2 111 135 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 157 179 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 180 203 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 565 589 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 277 300 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 325 349 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 204 228 IPR003591 -
Vium7071g00001 1018 SMART LRR_typ_2 253 276 IPR003591 -
Vium7071g00001 1018 SUPERFAMILY Protein kinase-like (PK-like) 725 1001 IPR011009 -
Vium7071g00001 1018 PRINTS Leucine-rich repeat signature 277 290 - -
Vium7071g00001 1018 PRINTS Leucine-rich repeat signature 183 196 - -
Vium7071g00001 1018 FunFam Receptor-like protein kinase HSL1 350 658 - -
Vium7071g00001 1018 Gene3D Ribonuclease Inhibitor 197 242 IPR032675 -
Vium7071g00001 1018 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 422 1002 - -
Vium7071g00001 1018 SUPERFAMILY RNI-like 308 641 - -
Vium7071g00001 1018 Pfam Protein kinase domain 727 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7071g00001 1018 Gene3D Ribonuclease Inhibitor 45 196 IPR032675 -
Vium7071g00001 1018 Pfam Leucine rich repeat 255 314 IPR001611 GO:0005515
Vium7071g00001 1018 Pfam Leucine rich repeat 182 240 IPR001611 GO:0005515
Vium7071g00001 1018 ProSiteProfiles Protein kinase domain profile. 725 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7071g00001 1018 Gene3D Ribonuclease Inhibitor 351 665 IPR032675 -
Vium7071g00001 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 809 1017 - -
Vium7071g00001 1018 Gene3D Phosphorylase Kinase; domain 1 690 808 - -
Vium7071g00001 1018 ProSiteProfiles Leucine-rich repeat profile. 614 636 IPR001611 GO:0005515
Vium7071g00001 1018 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 256 345 - -
Vium7071g00001 1018 ProSiteProfiles Leucine-rich repeat profile. 182 205 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7071g00001 Vium-Chr7071 2348 5855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7071g00001 41 1008 Receptor kinase-like Gene Family AT4G28490 58.180 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium7071g00001 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7071g00001 - - gmx:100796415 1401.34