Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium706g00002 ATGGCAGCTACATTCCCACCCGTCACAGATATAAGGAGCGGTTTCAATCCAGCTTCCAGAACCTTCCACAGCCTCAAACCACCACTTCTTCTCCCTCCTCCCAACGCTGCCATCTCCGCCGCTTCCTACGTCCTCTTCCTCCGTCGCAACTCGCACTTTCCGGACTCCTCAACCGCCGTTGTCGATTCCGCCTACGGCCATAGCCTCTCCTACGGCGAACTCATCCACCGCGCTGAGAACCTAGCTGCCAACCTCGCCACAGTTCTCAAACTATCAAAAGCCCACACCGCGCTCGTTCTCTCCCCTAACATCATCCAAGTTCCGATCCTCTGCTTCGCGCTCCTCTCCCTCGGCGTGGTCGTCTCCCCCGCGAATCCTCTTTCCACACGCTCCGAGATCACTCGCCTCTTCCACCTCAGCAAACCAGCCATCGTCTTCGCAGTGACTTCAAACGCAGAAAAAACACGCGAGTTCCATGTCCGCACGGTCCTCCTCGACTCGCCAGAGTTCGACTCCCTCACCAGGACAAAGATACAGCCTCTGAGTCCAACCACGTCCCCCACGCCGGTGACTCAGTCCGACGTGGCAGCCATTCTGTACTCTTCCGGCACGACGGGAAAGGTGAAGGGCGTTATGCTTACTCACCGCAACCTAACCGCAATAGCCGCGGGATACGACACGGTCCGCACGAAGCGCGCGGAGCCCGCGGTGTACCTCTATACGGTGCCGTATTTCCACGTGTACGGTTTCACCTTCAGCCTGGGGGCGATGGTGCTGTCGGATACGGTGGTGATAATGGAGAGGTTCAGTTTGAGGGGCATGCTGAGCGCCGCGGAGAGGTTCCGAGTGACGCACATTACGGTGGTGCCGGCACTGGTAGTAGCTTTGACGAAGGACAAAGTGATAGACAGATACAATTTGACGTCGTTGGAAGGGATCGTTTGCGGTGGAGCTCCACTGAGGAAGGAAACCGATGAAGCTTTCAAAGCCAAGTTCCCCAAGGTCCTCGTCATGCAGGGATACGGTTTAACCGAATGTGTGGTTACCCGAACGACTCCCGAGGAAGCTAATCACGTGGGAACAGTGGGTAGACTGAAACCAGACATAGAAGCAAAAGTTGTTAACCCACAAACAGGGAAACTCATGTTTCCTGGTGAAAGGGGTGAACTATGGATCAAAGGACCTTATGTTATGAAAGGTTATGTTGATGATCCAGAAGCAACTTCAGCAACTTTGGTGAATGGATGGTTAAGGACTGGAGACCTTTGTTATTTCGATAATGATGGTTTCTTGTATATTGTTGATAGGTTAAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAATTGCTCCTATCTCACCCAGACATACGTGATGCTGCAGTTATTCCATACCCTGACAATGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTGAGACAACCTCAAAGTTCCCTTGGCGTAGCACAAGTTATAGATTTTGTTGCCAAACAGGTTACACCATACAAGAAAGTAAGGCGTGTAGCATTTGTTGATTCCATTCCCAAGAATGCTTCAGGAAAGATTCTGAGAAAGGATTTAAGTAAAGTTGCGCTCTCTAAGTTATAA 1626 0.5178 MAATFPPVTDIRSGFNPASRTFHSLKPPLLLPPPNAAISAASYVLFLRRNSHFPDSSTAVVDSAYGHSLSYGELIHRAENLAANLATVLKLSKAHTALVLSPNIIQVPILCFALLSLGVVVSPANPLSTRSEITRLFHLSKPAIVFAVTSNAEKTREFHVRTVLLDSPEFDSLTRTKIQPLSPTTSPTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIAAGYDTVRTKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSDTVVIMERFSLRGMLSAAERFRVTHITVVPALVVALTKDKVIDRYNLTSLEGIVCGGAPLRKETDEAFKAKFPKVLVMQGYGLTECVVTRTTPEEANHVGTVGRLKPDIEAKVVNPQTGKLMFPGERGELWIKGPYVMKGYVDDPEATSATLVNGWLRTGDLCYFDNDGFLYIVDRLKELIKYKGYQVAPAELEELLLSHPDIRDAAVIPYPDNEAGEVPMAFVVRQPQSSLGVAQVIDFVAKQVTPYKKVRRVAFVDSIPKNASGKILRKDLSKVALSKL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium706g00002 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 535 - -
Vium706g00002 541 Pfam AMP-binding enzyme 49 443 IPR000873 -
Vium706g00002 541 SUPERFAMILY Acetyl-CoA synthetase-like 48 538 - -
Vium706g00002 541 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Vium706g00002 541 Gene3D - 439 539 IPR045851 -
Vium706g00002 541 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Vium706g00002 541 CDD 4CL 50 533 - -
Vium706g00002 541 Gene3D - 33 438 IPR042099 -
Vium706g00002 541 FunFam 4-coumarate--CoA ligase 2 439 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium706g00002 Vium-Chr706 73937 95984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium706g00002 8 538 Monolignol Biosynthesis Gene Families AT5G63380 48.732 2.01e-178 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium706g00002 K01904 - gmx:100784234 836.254