Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium706g00001 ATGTTCCAAGGTGGTACAATGAGACAGTTTTGCTACCTTTATCTTGTTGTTCTTTCATGGTTCTTTTTCATCCCAAACACTTATGAGTTACAAGCTGCTCAGACACAAGCATTGCTGCAGTTAAGAGTTCATCTAGAGTATCCCTCTTCTTTACAGATATGGCAATATTACCAGGGGGACCTTTGTACGCTCTCTCCATCTGCAAACCTGAGCATTAAATGTGAAGATGATGAGGTAACTGAGCTTAAAATTACGGGTGAAAAATCTTCGAAGCCACCACGGTTCAATGGATATCCAGTTCCTAATCACACTCTATCCATGAATTTCTCCATTGATTCCTTTTTCATCACTTTGACAGAGTTGACCACCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAGATTCACAGTTTCACTTTGCTTCAAGTTTTGGACTTGAGTTCCAATTTCTTATTTGGAGCCATTTCACCAAAAATATCCACAATGGTAACGCTTCACACACTGACCCTTGATGACAATTATTTTAACACCACTATGCCCGATTCCTTTGATTCTCTGTCCAATCTGAATATCTTGAGTATGAAGAGCAATGGCTTAAAGGGTTCATTCCCCTCCTCACTGGGAAAAATTAAGACACTTGAAGTTATTTCCTTGTCCCACAATGAGTTGTCTGGTGACCTGCCTGGTCTCAGTTCTCTCACTGGCCTACATGTTCTGGATTTAAGAGAAAACCATTTAGAATCTGAACTACCATTGTTGCCAAAATATGTGGTCACTGTGCTGCTTAGCAATAACTCATTTTCAGGAGAGATACCTAAGCAGTTTCAAGAACTGGATCAGCTTCAACATCTTGATCTTTCTTCAAATTTTCTCAGTAAGACACCCCCATCTGCCTTGTTTTCTCTGCCAGAAATAAGTTATTTGAATCTGGCAAGCAATGTGCTAAGTGGGACCCTCCCAGACAAACTTAACTGTGGTAGCAAACTTGGGTTTGTGGACATTTCTCGTAACAAGCTAAGTGGTGGACTTCCTTCTTGCTTGGCGAATACATCTGACAGTAGAGTTGTTAGATATGCTGGAAACTGTCTATCTGTTGACTCTCAGAACCAGCACAGAAGGTCTTATTGCAAAGAATCCACCTCTGGATGGAAAAGCTTCAAGACATGGGAACTAGCTGTAGTAATGGCCATCGTTGTTGTACTTGTTCTTGTGGTTTTGGTTTCTAGCGTCTTCTTATGGAAAAAGTACCATTCCAGAAAGACAACTGGGCAAGATAACTCCTCGATAGCAGTTCCGTCAGAGATCCTTGCAAATGCTAGATTTATTTCTCAAACAGTGAAGCTAGGAACACAAACTATTCCAACCTGTCGGCAATTTTCAATAGAGGAATTGAAGGAAGCCACAAAAAACTTTGATTTGTCAACTTATATTGGTCAAGGCTCCATGGGGAAGATGTACAAAGGTAAACTGGAGAATGGATCCTATGTGGCAATACGGTCTTTGGCTCTGTCAAAGAAATGCTCAATTCAAACTCTCAGAGCTAAATTGGATTTACTCTCAAAACTTCATCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGGAGGACAAGATGATTCCAATTCCCATAAACTTCATCTTGTGTATGAGTATGTGCCAAATGGGAATTATCATGCTCATCTCTCAGAACTTTCTGTAGGGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGCTTTAGTAACCTACTGAAGACAAAAAATGTCTTGCTTGATGAATACTGCATTCCAAAACTAAGTGACTATGGTATGTCCATCATCACAGAAGAAATTGAAATGTTTGAGGCAAAGGGCGAGAAATCAAAGCCATGCCTAAGGACAAAAGCAGATGATGATGTTTATAATTTTGGATTCATCCTGTTCGAATCACTTGTTGGACCCATAGCATGCGACAGAGGTGAAACATTTTTCCTAAATGAAAAGGCATCGTTTGGGAGTCAAGATGGTAGAAGAAAGATTGTGGATCCGATAGTGTTGACCACTTGCTCTCAAGAGTCTTTATCAATTGCAATATCAATAACAACCAAATGCATTTCTCCAGAATCTTCCCTTCGTCCCTCTTTTGAGGATGTCTTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGACCACAAATCAGATTAA 2283 0.4043 MFQGGTMRQFCYLYLVVLSWFFFIPNTYELQAAQTQALLQLRVHLEYPSSLQIWQYYQGDLCTLSPSANLSIKCEDDEVTELKITGEKSSKPPRFNGYPVPNHTLSMNFSIDSFFITLTELTTLRVLSLVSLGIWGPLPDKIHSFTLLQVLDLSSNFLFGAISPKISTMVTLHTLTLDDNYFNTTMPDSFDSLSNLNILSMKSNGLKGSFPSSLGKIKTLEVISLSHNELSGDLPGLSSLTGLHVLDLRENHLESELPLLPKYVVTVLLSNNSFSGEIPKQFQELDQLQHLDLSSNFLSKTPPSALFSLPEISYLNLASNVLSGTLPDKLNCGSKLGFVDISRNKLSGGLPSCLANTSDSRVVRYAGNCLSVDSQNQHRRSYCKESTSGWKSFKTWELAVVMAIVVVLVLVVLVSSVFLWKKYHSRKTTGQDNSSIAVPSEILANARFISQTVKLGTQTIPTCRQFSIEELKEATKNFDLSTYIGQGSMGKMYKGKLENGSYVAIRSLALSKKCSIQTLRAKLDLLSKLHHPNLVSLLGHCIDGGGQDDSNSHKLHLVYEYVPNGNYHAHLSELSVGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNLLKTKNVLLDEYCIPKLSDYGMSIITEEIEMFEAKGEKSKPCLRTKADDDVYNFGFILFESLVGPIACDRGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISPESSLRPSFEDVLWNLQYAAQVQATADADHKSD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium706g00001 760 ProSiteProfiles Protein kinase domain profile. 478 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium706g00001 760 SUPERFAMILY Protein kinase-like (PK-like) 459 743 IPR011009 -
Vium706g00001 760 SUPERFAMILY L domain-like 93 371 - -
Vium706g00001 760 Gene3D Ribonuclease Inhibitor 31 261 IPR032675 -
Vium706g00001 760 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Vium706g00001 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 562 760 - -
Vium706g00001 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 31 262 - -
Vium706g00001 760 Gene3D Transferase(Phosphotransferase) domain 1 562 760 - -
Vium706g00001 760 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Vium706g00001 760 Pfam Leucine rich repeat 266 322 IPR001611 GO:0005515
Vium706g00001 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 264 388 - -
Vium706g00001 760 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Vium706g00001 760 PANTHER UNNAMED PRODUCT 120 674 - -
Vium706g00001 760 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
Vium706g00001 760 Gene3D Phosphorylase Kinase; domain 1 450 561 - -
Vium706g00001 760 Pfam Protein tyrosine and serine/threonine kinase 480 673 IPR001245 GO:0004672|GO:0006468
Vium706g00001 760 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 441 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium706g00001 Vium-Chr706 2785 8183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium706g00001 7 688 Miscellaneous Gene Families AT5G14210 54.143 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium706g00001 PK_Tyr_Ser-Thr 1.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium706g00001 - - gmx:100799183 1261.51