Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7069g00005 ATGGCGTCCGATGCCGTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCTAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAATCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGTAAGGCTCTCACCTACAATCGCCTTGCAAGCTCTTTTATTAGAACTCCTGAAAAGCTTTGA 249 0.494 MASDAVTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVSKALTYNRLASSFIRTPEKL 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7069g00005 82 Gene3D Arf GTPase activating protein 1 78 IPR038508 -
Vium7069g00005 82 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 62 - -
Vium7069g00005 82 SMART arf_gap_3 10 81 IPR001164 GO:0005096
Vium7069g00005 82 SUPERFAMILY ArfGap/RecO-like zinc finger 12 63 IPR037278 -
Vium7069g00005 82 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vium7069g00005 82 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vium7069g00005 82 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 82 IPR001164 GO:0005096
Vium7069g00005 82 Pfam Putative GTPase activating protein for Arf 12 63 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7069g00005 Vium-Chr7069 18139 19824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7069g00005 14 62 C2H2 Transcription Factor Family AT4G21160 53.061 4.44e-15 66.2