Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7069g00004 ATGGCGTCCGATGCCGTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCTAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAATCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGACTCTTGATATGAATGCCATATGCTGTGCAGTAAGGCTCTCACCTACAATCGCCTTGCAAGCTCTTTTATTAGAACTCCTGAAAAGCTTTGAACCATGTCTCAAACATGATTCAAATCACGTAAGATACAGGTCTTGTGTCTGTTGA 336 0.4702 MASDAVTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRTLDMNAICCAVRLSPTIALQALLLELLKSFEPCLKHDSNHVRYRSCVC 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7069g00004 111 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 69 IPR001164 GO:0005096
Vium7069g00004 111 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 67 - -
Vium7069g00004 111 SUPERFAMILY ArfGap/RecO-like zinc finger 12 69 IPR037278 -
Vium7069g00004 111 Pfam Putative GTPase activating protein for Arf 12 69 IPR001164 GO:0005096
Vium7069g00004 111 Gene3D Arf GTPase activating protein 1 71 IPR038508 -
Vium7069g00004 111 SMART arf_gap_3 10 109 IPR001164 GO:0005096
Vium7069g00004 111 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vium7069g00004 111 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7069g00004 Vium-Chr7069 18138 19830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7069g00004 14 68 C2H2 Transcription Factor Family AT4G21160 47.273 5.80e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7069g00004 K12493 - vum:124844617 221.09