Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7069g00002 ATGGCGTCCGATGCCGTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCTAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAATCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAGATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAATACACATCCAGAGCTGCGGACTTGTATAGGCAACTTCTTTCTAAGGAAGTGGCTAAAAGTATGGCTGAGGACTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCCCAGGGTATTAATGGGCTTCCTGAAATCAGGACCAATGAAGTTCCAAAAGAAAACATTCTGGAAAAGCCTGAAAAGCTTGAGGTCACCTCTTCACCTAGGGCTTCTCACTCAGTAATTTCAAGTACTGTCAAGAAACCTATTGGTGGTAAAAAAGCTGGGAAGGGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGACAAGTGAGTCTATCTATGAGCAGAAGCCTGAGGAAGCCCCTGCTCCTGTTCCATCCTCAGCAAACAATATGCCTGCTGGACCAGCTCTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCCTCTGAGTTGAATACTGGAGGCTCATCCGTCATGAGTCACGTGTCTCCACCAAAGTCATCAAGCTTTTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCCGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAGGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGATCACACCAAAGCTGCAGATTTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCGACTGCCATCTCCAGTGCCGATCTTTTTGGTGACTCAAAAGACAACGCCATTGATCTTTCTGCCAGTGACCTCATCAATCGATTATCTTTTCAGGCACAACAGGACCTTTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGATCAGTACATTAGCCTCCACATTGATGACTGATCTTCAGGACCGAATCCTCTAA 1206 0.4552 MASDAVTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEDLPSSPVASQSSQGINGLPEIRTNEVPKENILEKPEKLEVTSSPRASHSVISSTVKKPIGGKKAGKGGGLGARKLTKKTSESIYEQKPEEAPAPVPSSANNMPAGPALTSRFEYVENVQSSELNTGGSSVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQESDEARRKFSNAKSISSSQFFGDHTKAADLDSQATLSKFSGSTAISSADLFGDSKDNAIDLSASDLINRLSFQAQQDLSSLKNIAGETGKKISTLASTLMTDLQDRIL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7069g00002 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vium7069g00002 401 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Vium7069g00002 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vium7069g00002 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vium7069g00002 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vium7069g00002 401 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Vium7069g00002 401 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Vium7069g00002 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 401 - -
Vium7069g00002 401 MobiDBLite consensus disorder prediction 130 146 - -
Vium7069g00002 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vium7069g00002 401 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vium7069g00002 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vium7069g00002 401 MobiDBLite consensus disorder prediction 128 231 - -
Vium7069g00002 401 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7069g00002 Vium-Chr7069 7204 14821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7069g00002 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.22e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7069g00002 K12493 K11855 gmx:100785169 676.781