Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium705g00008 ATGTCCGCCGCCTTTCGCCTCTTGCTTCTTCTCTCACTCTTCTCTCTACTCACCGCCCAACAGCACGACCAGCGTCAAATCCTTCTCAACCTAAAATCCTCTCTCAAGAGTTCAAATTTTTCAAAACTCTTTGACTCATGGAATGACACCAACTCCGTTTGCAGTTTCAACGGAGTAATTTGCAACACCCTCCGTTCGGTAACCGAAATCAACCTCTCCAACCAAAATCTGACTGGGGTTCTTCCCTTTGACTCTCTCTGCAACCTTCCATCGCTCCAGAAACTCGCGTTCGGCTACAACGGCTTGTATGGCAATGTTTCAGAGGACATTAGAAAATGCGTCACCTTGCGCTACTTGGATTTGGGAAACAACCTTTTCTCTGGTCCCTTCCCCGACATATCTCCTCTTAATCAGTTGGAGTATTTGTTTTTAAACAAAAGTGGATTTTCGGGCACTTTTCCGTGGCAGTCGCTGTTAAACATGACGGGTCTGTTGCAGTTAAGTGTCGGAGATAACCCTTTCGATTTCACGCCGTTTCCAAAAGAGGTTGTAAGTCTCAAGAAGCTGAATTGGCTCTACCTGTCCAACTGCACCCTCGGAGGGAAACTTCCGATGGGACTTGGCAACCTCACGGAGCTCACGGAATTGGAATTCTCCGACAATTTCATCACCGGCGAATTTCCCGCGGAGATTGTGAACCTTCGGAACCTCTGGCAGCTTGTGTTTTTCAACAATTCCTTCACGGGGAAGATTCCAACCGGGTTGAGAAACCTCAAGGGGCTTAAGAATTTGGACGGCTCCATGAATAGACTCGAAGGGGATCTTTCTGAATTGAAGTACTTGACCAATCTGGTTTCGCTTCAATTTTTTGAGAACAATTTGTCAGGGGAGATTCCTGATGAAATTGGCGAATTCAAAGGCCTCAAGTCCCTGTCTCTGTACAGGAACAAATTGACAGGTCCTATTCCTCAGAAGGTTGGTTCCTGGGCTGAGTTTGATTTCATCGATGTGTCGGAGAATTTTTTGTCGGGGACTATTCCGCCGGAAATGTGTAAAAAGGGGAAGATGACCGCACTGCTCGTGCTTCAGAACAATCTCTCCGGCGAGATTCCGGCCACCTATGGAGACTGTTGGAGTATGAAGCGATTCAGAGTCAGCAATAACTCGCTCTCGGGTACCGTGCCACCGGCGATTTGGGGATTGCCCAACGCAGAAATAATCGATATTGAACTGAATCAGTTCGAAGGTTCGGTTGCTTCGGATATCAGAAACGCCAAAACATTAGGTTCAATATTAGCTAGGCAAAATCGGTTGTCCGGTGAAATACCCGATGAAATCTCCAAAGCAACGTCGTTGGTGACTTTGGACCTGAGCGAGAATCAGATTTCGGGGAAGATTCCAGAAGGAATCGGGGAGCTTAAAGAACTAGGTAGTCTTCATTTGCAGAGCAATAGGTTATCAGGTTCGATACCGGAATCTCTCGGTTCCTGCAAATCCCTCAACGACATTGACCTATCGAGGAATTTACTCTCTGGAGAAATCCCCACCTCGTTGGGTTCTTTCCCCGCGCTGAATTCTCTGAATCTTTCAGACAACGATCTCTCTGGTGAAATTCCTGGGGGTTTGGCGTTCCTCAGGTTAAGCCTCTTTGATCTATCGTACAACCGATTAACGGGTAAAATTCCTCAGGCTCTAACCCTCGAAGCTTACAACGGAAGCCTCTCCGGAAACCCCGGTTTGTGCAGCATCGACACCATCAACTCCTTTCCTCGTTGCTCTTCTTCCTCTGGCATGTCCAAGGACATGCGTGATCTCGTAATTTGCTTCGCGATAGCGTCGATATTATTGCTTTAGTGTTTGGGCGTTTACTTGCAGCTGAAGAGGAGGAAGGAAGAGGGAGAAAGATTCGGAGAACGATCCTTGAAGGAAGAATCCTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCGGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTGATAGGAAAGGGAGGTTCAGGGAACGTGTACAGAGTCACGCTTTCCAACGGAAAAGAGCTGGCGGTGAAGCATATTTGGAACACCGATGTACCCGCGCGGAAAAAGTCGTGGAGCAGCACTCCCATGCTTGGGAATAAGCAGGGTGGGAGGTCTAAGGAGTTCGATGCAGAGGTTCAGGCTTTGAGCTCCATAAGGCACGTGAATGTGGTGAAGCTTTATTGCAGCATAACGAGTGAAGATTCGAGCTTGTTGGTGTACGAGTATTTACCCAATGGAAGCTTGTGGGATCGGCTTCACACAAGTAGAAAGATGGAGCTTGATTGGGAAACGAGGTACGAAATCGCTGTTGGGGCAGCCAAAGGATTGGAGTATTTGCATCACGGATGCGAACGGCCCGTGATTCACAGAGATGTCAAATCTAGTAACATCTTGTTGGATGAGTTTCTAAAACCTAGAATTGCGGATTTTGGGCTTGCCAAGGTTATTCAGGCCAACGTTGGAAAGGATTCTTCCTCTCGTGTCATCGCCGGAACCCACGGTTACATTGCTCCAGAATATGGTTATACATACAAAGTGAATGAGAAGAGTGACGTGTACAGTTTTGGAGTGGTGCTGATGGAGCTGGTAACTGGAAAAAGGCCAAACGAAGCAGAATTTGGGGAGAATAAGGATTTGGTGAGTTGGGTCCATAACATGGCACGAAGCAAAGAGGGTCTTAGGAGTGCTGTGGATTCGAGGATTCCAGAAATGTATAAAGAGGAAGCTTGCAAGGTTTTGAGAACCGCGGTTCTGTGCACGGGAACTCTTCCGGCTTTAAGACCCACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAACTGGTTGGGATTGTTATCAGCAAAGACGGTGGTGAAAAGAAAATAGGAGTGAATGATAAGAAATAA 2946 0.4722 MSAAFRLLLLLSLFSLLTAQQHDQRQILLNLKSSLKSSNFSKLFDSWNDTNSVCSFNGVICNTLRSVTEINLSNQNLTGVLPFDSLCNLPSLQKLAFGYNGLYGNVSEDIRKCVTLRYLDLGNNLFSGPFPDISPLNQLEYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDFTPFPKEVVSLKKLNWLYLSNCTLGGKLPMGLGNLTELTELEFSDNFITGEFPAEIVNLRNLWQLVFFNNSFTGKIPTGLRNLKGLKNLDGSMNRLEGDLSELKYLTNLVSLQFFENNLSGEIPDEIGEFKGLKSLSLYRNKLTGPIPQKVGSWAEFDFIDVSENFLSGTIPPEMCKKGKMTALLVLQNNLSGEIPATYGDCWSMKRFRVSNNSLSGTVPPAIWGLPNAEIIDIELNQFEGSVASDIRNAKTLGSILARQNRLSGEIPDEISKATSLVTLDLSENQISGKIPEGIGELKELGSLHLQSNRLSGSIPESLGSCKSLNDIDLSRNLLSGEIPTSLGSFPALNSLNLSDNDLSGEIPGGLAFLRLSLFDLSYNRLTGKIPQALTLEAYNGSLSGNPGLCSIDTINSFPRCSSSSGMSKDMRDLVICFAIASILLLXCLGVYLQLKRRKEEGERFGERSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDVPARKKSWSSTPMLGNKQGGRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVIQANVGKDSSSRVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPNEAEFGENKDLVSWVHNMARSKEGLRSAVDSRIPEMYKEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGIVISKDGGEKKIGVNDKK 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium705g00008 981 Gene3D Ribonuclease Inhibitor 20 180 IPR032675 -
Vium705g00008 981 Pfam Protein kinase domain 667 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium705g00008 981 Gene3D Phosphorylase Kinase; domain 1 648 758 - -
Vium705g00008 981 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Vium705g00008 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vium705g00008 981 FunFam Receptor-like protein kinase HAIKU2 648 758 - -
Vium705g00008 981 SMART serkin_6 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium705g00008 981 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 468 588 - -
Vium705g00008 981 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vium705g00008 981 SUPERFAMILY L domain-like 44 323 - -
Vium705g00008 981 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Vium705g00008 981 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 953 - -
Vium705g00008 981 FunFam Receptor-like protein kinase 7 isoform A 355 467 - -
Vium705g00008 981 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 759 968 - -
Vium705g00008 981 ProSiteProfiles Protein kinase domain profile. 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium705g00008 981 Gene3D Ribonuclease Inhibitor 279 350 IPR032675 -
Vium705g00008 981 Gene3D Ribonuclease Inhibitor 467 588 IPR032675 -
Vium705g00008 981 Gene3D Ribonuclease Inhibitor 351 466 IPR032675 -
Vium705g00008 981 SUPERFAMILY L domain-like 271 591 - -
Vium705g00008 981 Gene3D Transferase(Phosphotransferase) domain 1 759 962 - -
Vium705g00008 981 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vium705g00008 981 FunFam Receptor-like protein kinase 7 106 354 - -
Vium705g00008 981 SUPERFAMILY Protein kinase-like (PK-like) 656 953 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium705g00008 Vium-Chr705 120205 123610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium705g00008 5 973 Receptor kinase-like Gene Family AT1G09970 61.088 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium705g00008 Pkinase 6.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium705g00008 - - gmx:100779554 1667.9