Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium705g00007 ATGAACCACCATCATCCCTTCATCACCCTCTTCTCTACTATACTATTAGTTTCCACCACCACCACCACCACCCTGTCACTCTCCCAGGTTATCATCACCAGTACCACCACCAAGAACCAGTCACAGTTTTTCTTTCTCATGAAACTCTCCCTCCCCGGAAAGTACCCCATGAATTGGGACGCTGGAAAACCAGTGTGCAGCTTCACCGGAGTTACCTGCAACACCAAAGGTGACGTTATCGGCCTCGACCTTTCAGGTTGGTCATCACTTACTGGAAAGTTCCCGGAAGATACATGCTCTTACCTCCCACAGTTACGTGTTCTCCGCCTCGGCCACACCAGGTTCAAGTTCAACGTAGGCACCATCCTCAACTGTTCCCACTTGGAAGAGCTTAACATGAACCACATGTCCCAGACCGGCACGCTCCCAGATTTCTCTTCCTTGAAATCTCTGAGGATTCTCGATTTGTCCTACAACGTCTTCACAGGCCAATTCCCCATGTCAGTGTTCAACCTCACCAACCTCGAGGTGCTAAACTTCAATGAAAACGGAGGCTTCAACCTGTGGCAGTTACCCGCAGATATTGACAGGTTGAAACACCTCAAGTCCATGGTTCTCACGACGTGCATGGTGCATGGTCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCATCGATCTTGAGCTGAGTGGGAATTTCCTCACGGGACAAATTCCGAAAGAGCTTGGTCAGCTGAAGAACCTTCAACAGCTTGAGCTTTACTATAACTACCATCTCGTTGGGAACATTCCAGAGGAGTTGGGGAACCTCACGGAGCTCGTGGATTTGGATATGTCAGTGAACAAGTTTACCGGGAGCATCCCTGCGTCGGTTTGTAGGCTTCCCAAGCTTCAAGTCTTGCAGCTCTACAACAACAGCCTCACAGGTGAAATCCCAGGTGCGATCGAAAACTCAACAGCTTTAAGAATGCTGTCTCTGTACGACAACTTCCTTGTAGGACAGGTTCCCAAGAAACTGGGACAGTTCTCTGGAATGTTAGTTCTTGACTTGTCGGAGAATAAATTTTCTGGTCCGTTGCCAACCGAGGTTTGCAAGGGTGGTACGCTAGAGTACTTTCTCGTTCTGGATAACATGTTTTCTGGAGAGATACCACAGAGTTATGCGAACTGCATGATGCTGTTGAGGTTTAGAGTGAGTAACAACCGTTTGGAGGGTTCCATTCCCGCGGGACTCCTTGGTTTACCACACGTTTCAATCATTGATGTGAGTAACAATAACTTGAATGGTCCAATTCCTGAGATTAACGGGAATTCTAGAAACCTGTCTGAACTGTTCCTTCAGAGGAACAAAATTTCAGGTGTCATAACTCCCACAATATCTCGAGCCATTAGTCTGGTCAAAATAGATTTCAGTTACAACCTTCTATCTGGTCCAATCCCTTCCGAAATTGGCAACCTCAGAAGGCTCAATTTGCTTATGTTGCAAGGGAACAAGCTGAATTCTTCCATCCCTGGTTCACTCTCTTCATTAGAATCTCTCAACCTTCTTGATCTCTCCAACAATCTTTTAACTGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTACCAAACTCTATTAACTTCTCGCACAATATGCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGAGGCTTGGTGGAAAGTTTTGCAGGGAATCCTGGTTTGTGTGTGCTACCGGTGTATGCCAACTCATCGGATCGAAACTTCCCCATATGTCCAAGTGCCTACAAGAGCAAGAGGATCAACACCATCTGGATAGCTGGGGTGTCAGTGGTTTTGATCTTTATTGGGTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACACCGCTGCAGTGGAACATGAGGAGACACTGTCTTCATCGGTTTTCTCTTATGATGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCGTTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTCGCAGTGAAGAGGCTGTGGAGTCGCAAGTCCAAGGATTCGACTCCAGAGGATCGGTTGTTTGTGGACAAGGCATTGAAGGCAGAGGTGGAGACCTTAGGAAGCATAAGACACAAGAACATAGTGAAACTATACTGCTGCTTCTCCAGTTTCGAGTGCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATTCCCTGCACAAGGGTTGGACCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGAATTGCACAGGGTTTATCATACCTTCACCATGATTTGCTTCTTCCTATTATCCATCGAGACATCAAGTCAACCAATATACTGTTGGATGTTGATTACCAGCCCAGGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGTGAAGGATTCCACCACAACTGTCATTGCAGGAACATATGGTTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGACGTCTACAGTTTTGGGGTGATTTTGATGGAGCTGTTAACTGGGAAGAAGCCCGTGGAGGCAGAGTTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTAGAAGGCAAGGAGGGGGCAAGACCAAGTGAAGTTTTTGATCCGAGGTTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGCGGTTCCGACTCTTGCAAGTTGTCAACCAAAGATGTTTCAAATGTCACCGTAGTAAAGAAACCATATGAATTATAA 2913 0.4655 MNHHHPFITLFSTILLVSTTTTTTLSLSQVIITSTTTKNQSQFFFLMKLSLPGKYPMNWDAGKPVCSFTGVTCNTKGDVIGLDLSGWSSLTGKFPEDTCSYLPQLRVLRLGHTRFKFNVGTILNCSHLEELNMNHMSQTGTLPDFSSLKSLRILDLSYNVFTGQFPMSVFNLTNLEVLNFNENGGFNLWQLPADIDRLKHLKSMVLTTCMVHGQIPASIGNITSLIDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCRLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLVGQVPKKLGQFSGMLVLDLSENKFSGPLPTEVCKGGTLEYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSIPAGLLGLPHVSIIDVSNNNLNGPIPEINGNSRNLSELFLQRNKISGVITPTISRAISLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNMLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDRNFPICPSAYKSKRINTIWIAGVSVVLIFIGSALFLKRRCSKDTAAVEHEETLSSSVFSYDVKSFHKISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRKSKDSTPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFSSFECSLLVYEYMPNGNLWDSLHKGWTLLDWPTRYRIALGIAQGLSYLHHDLLLPIIHRDIKSTNILLDVDYQPRVADFGIAKVLQARGVKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKLSTKDVSNVTVVKKPYEL 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium705g00007 970 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 745 958 - -
Vium705g00007 970 Gene3D Phosphorylase Kinase; domain 1 643 744 - -
Vium705g00007 970 SUPERFAMILY RNI-like 260 581 - -
Vium705g00007 970 Gene3D Ribonuclease Inhibitor 187 291 IPR032675 -
Vium705g00007 970 SUPERFAMILY Protein kinase-like (PK-like) 646 940 IPR011009 -
Vium705g00007 970 FunFam receptor protein-tyrosine kinase CEPR1 643 744 - -
Vium705g00007 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Vium705g00007 970 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 225 - -
Vium705g00007 970 FunFam Receptor protein-tyrosine kinase CEPR1 295 581 - -
Vium705g00007 970 Gene3D Ribonuclease Inhibitor 295 581 IPR032675 -
Vium705g00007 970 FunFam Leucine-rich repeat receptor-like protein kinase 188 291 - -
Vium705g00007 970 SUPERFAMILY L domain-like 20 356 - -
Vium705g00007 970 Gene3D Ribonuclease Inhibitor 35 186 IPR032675 -
Vium705g00007 970 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium705g00007 970 SMART serkin_6 660 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium705g00007 970 Gene3D Transferase(Phosphotransferase) domain 1 745 964 - -
Vium705g00007 970 Pfam Protein kinase domain 662 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium705g00007 Vium-Chr705 97777 101762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium705g00007 36 947 Receptor kinase-like Gene Family AT5G49660 64.527 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium705g00007 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium705g00007 - - gmx:100785822 1711.43