Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7059g00022 ATGGCCAAAGGATCTTCAGAGACAAAATCCATGACATTTATATGCCTCTTCTTGTTCATGCTCAATTTCCACTCATCCCACGGAGATCCAAAAGAGGTTCAGCTTTTATTATCCTTCAAAGCTTCCATCGATGACCCGCTTCACTTTCTCTCCAACTGGGAAACTTCCTCTGCCACTTTATGCAGGTGGCATGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGATGCTCTCGGGAAAAAACATGACCGGCGAGGTCTCCTCTATTTTTCAACTTCCATACGTCGCAAACATCGACCTTTCCAATAACCAGTTTGTTGGGGAAATCACTTTTAACTACTCTCTCAATTCTCTGTCTCTACTTCGTTACCTTAACCTCAGCAACAACAACTTCACTGGTTCTTTGCCTCAACCATTGTTTTCCGTGCTTTTCTCGAACCTTGAAAGTCTGGATCTCTCCAACAACATGTTTTCAGGGAACATACCTCACCAAATTGGATTGCTTTCCAGCCTAAGGTATCTTGATCTTGGAGGAAACGTTTTGGTAGGAAAGATTCCGAATTCCATCACCAACATGACCACTTTGCAGTACCTTACGTTGGCTTCAAACCAGTTAGTGGATAAGATACCACAAGAAATTGGCCAGATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAACCTTTCAGGTGAGATACCAATTAGCATTGGAGAGTTACTCTCTTTGAATCATCTCGACCTTGTCTACAACAACCTCACTGGACCGATTCCTCAATCTCTCGGACACCTCACCGAGCTTCAATATCTCTTTCTTTATCAAAACAAACTGAGTGGTCCAATTCCCCAATCCATTTTCGAACTGAAAAAGCTCATTTCACTCGATCTAAGTGATAACTCTCTTTCGGGTTTGATTTCTGAGCGCGTGGTTCAGCTCCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAACTTCACTGGGAAGATTCCAAAGGGTGTTGCATTTTTGCCTCGGCTCCAGGTCCTTCAGCTATGGTCAAATGGATTAATAGGTGAGATTCCTGAGGAGCTTGGAAAACATAGCAACCTCACTGTGTTGGACCTCTCCACCAACAACCTCGCTGGGAAGATTCCAGATAACATATGCCACTCAGGTAGTCTTTTCAAGCTGATCCTCTTCTCCAACTATTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGAGTGAGACTGCAAAACAACAAGTTCTCGGGGAAATTACCACCGGAGTTAACCACACTGCCTCAGGTGTACTTCTTGGATATCTCTGGAAACCAACTTTCCGGAAGGATCAATGACAGAAAATGGAACATGCCGTCGCTTCAAATGCTCAGTTTGGCCAACAATAACTTCTCAGGAGAACTCCCTACCTCTTTCGGGACACAAATTCTTGAGGACTTGGACTTATCAAACAACCAATTCTCAGGTTCTATTCCTCTAGATTATAAAAGCTTATCAGAGCTGGTGGAATTGAAGCTCAGCTATAACAAACTCTTCGGTAACATTCCAGAAGAAATTTGCTCGTGCAAGAAGCTTGTGGCCTTAGATTTGAGTCACAACCAGCTCAGTGGTGAAATTCCAATGAAATTCTCGGAGATGCCGGTTCTCGGTCTCCTTGACCTGTCAGAAAACCAATTCTCCGGCGAGATTCCGAAGGATTTGGGGAGCGCTGAGTCTCTCGTTCAGATCAACATTTCACACAACCATTTTCGTGGAAGTTTACCTTCTACCGGTGCTTTCCTCGCCATCAACGCCAGTGCAGTCACCGGCAACAACCTTTGTGACCGTGATGAAGACTCTTCAAGCGGGTTGCCACTGTGCAAAAGCAATAACCAGAACCCAACTTGGCTCTTCATCATGCTGTGTTTTCTACTAACTCTGGTTGCGTTCGCAGGAGCTTCTTTACTCGTCTTTTATGTTCACAAGAGAAAGAGCTTCTCGGAAGTGCGAAAAGTGGAAAACCAAGACGGAACCTGGGAAGTGCAGTTTTTTTGTGACAAAGCAGCGAAGTTGATGAAGGTAGAAAACGTTTTCTCTACGGTTAAAGAGGGAAGAGTCGTGTCCAAAGGAAGGAACTGGGTTTCCTACGAAGGGAAGTGCATGGAGAATGGCATGCAGTTCACGGTGATGGAAATCAGTGAGTTGAATTCTCTTTCGACGAGTATGTGGTAAGAAACAGTGAAGGGTGGAAAGGTTCGTCACCCCAATATCTTCAATCTTGTTGTGACGTGTAGGTGTGGGAAGAGAGGGTACTTGGTGTACGAACACGAAGAGGGTAAGAAACTAAGCGAGATTGTGAACAGTTTGAGTTGGAAACAGCGTTGCAAGATTGCTGTTGGCGTTGCAAAAGCGATTAAATTCCTGCATTCTCACGCTTCATCCATGGTTTTGGTGGGAGAGGTTGCAAGGGAGATAGTTAGGGTCGACATCAAAGGTGTCCCTCGCCTTAAGGTCACCCCTCCCATAATGACATGTTTGGATGTCAAGGGTATCACTTCTTCGACATACCTTGCCCAAGAGGCAAGAGAAAGGTAAAATGTGACAGAGAAGAGTGAGATATATGGGTTGGGAGTGATGCTGATTGAACTATTGACGGGAAGGAGCGGCATAGACATAGAAGCAGGAAATGGCATGCACAAGACTATTGTGGAGTGGGCCCGATATTGCTACTCTGATTGTCATGTTGACACGTGGATTGATCCTGTGATGAAAGGTGGAGATGCATTGAGGGATGAGAAAGACATGGTTGAGATGATGAATCTAGCGCTGCACTGTACCACAACCGATCCCACTGCAAGGCCATGCGCAAGAGATGTAGTGAAAGCCCTAGAGAGTTTTCAGAGAACTAGTTTTTGTTGA 2928 0.4515 MAKGSSETKSMTFICLFLFMLNFHSSHGDPKEVQLLLSFKASIDDPLHFLSNWETSSATLCRWHGITCDNNVNSSHVNAVMLSGKNMTGEVSSIFQLPYVANIDLSNNQFVGEITFNYSLNSLSLLRYLNLSNNNFTGSLPQPLFSVLFSNLESLDLSNNMFSGNIPHQIGLLSSLRYLDLGGNVLVGKIPNSITNMTTLQYLTLASNQLVDKIPQEIGQMKSLKWIYLGYNNLSGEIPISIGELLSLNHLDLVYNNLTGPIPQSLGHLTELQYLFLYQNKLSGPIPQSIFELKKLISLDLSDNSLSGLISERVVQLQRLEILHLFSNNFTGKIPKGVAFLPRLQVLQLWSNGLIGEIPEELGKHSNLTVLDLSTNNLAGKIPDNICHSGSLFKLILFSNYFEGEIPKSLTSCRSLRRVRLQNNKFSGKLPPELTTLPQVYFLDISGNQLSGRINDRKWNMPSLQMLSLANNNFSGELPTSFGTQILEDLDLSNNQFSGSIPLDYKSLSELVELKLSYNKLFGNIPEEICSCKKLVALDLSHNQLSGEIPMKFSEMPVLGLLDLSENQFSGEIPKDLGSAESLVQINISHNHFRGSLPSTGAFLAINASAVTGNNLCDRDEDSSSGLPLCKSNNQNPTWLFIMLCFLLTLVAFAGASLLVFYVHKRKSFSEVRKVENQDGTWEVQFFCDKAAKLMKVENVFSTVKEGRVVSKGRNWVSYEGKCMENGMQFTVMEISELNSLSTSMWXETVKGGKVRHPNIFNLVVTCRCGKRGYLVYEHEEGKKLSEIVNSLSWKQRCKIAVGVAKAIKFLHSHASSMVLVGEVAREIVRVDIKGVPRLKVTPPIMTCLDVKGITSSTYLAQEARERXNVTEKSEIYGLGVMLIELLTGRSGIDIEAGNGMHKTIVEWARYCYSDCHVDTWIDPVMKGGDALRDEKDMVEMMNLALHCTTTDPTARPCARDVVKALESFQRTSFC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7059g00022 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 148 239 - -
Vium7059g00022 975 SMART serkin_6 662 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7059g00022 975 PRINTS Leucine-rich repeat signature 296 309 - -
Vium7059g00022 975 PRINTS Leucine-rich repeat signature 508 521 - -
Vium7059g00022 975 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 393 967 - -
Vium7059g00022 975 Pfam Leucine rich repeat 223 282 IPR001611 GO:0005515
Vium7059g00022 975 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vium7059g00022 975 Pfam Leucine rich repeat 342 401 IPR001611 GO:0005515
Vium7059g00022 975 Pfam Protein tyrosine and serine/threonine kinase 743 966 IPR001245 GO:0004672|GO:0006468
Vium7059g00022 975 SUPERFAMILY L domain-like 29 264 - -
Vium7059g00022 975 Gene3D Ribonuclease Inhibitor 293 625 IPR032675 -
Vium7059g00022 975 Gene3D Ribonuclease Inhibitor 188 291 IPR032675 -
Vium7059g00022 975 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vium7059g00022 975 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Vium7059g00022 975 SMART LRR_sd22_2 269 295 - -
Vium7059g00022 975 SMART LRR_sd22_2 508 527 - -
Vium7059g00022 975 SMART LRR_sd22_2 365 388 - -
Vium7059g00022 975 SMART LRR_sd22_2 173 199 - -
Vium7059g00022 975 SMART LRR_sd22_2 149 168 - -
Vium7059g00022 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 31 147 - -
Vium7059g00022 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 779 - -
Vium7059g00022 975 SUPERFAMILY Protein kinase-like (PK-like) 704 971 IPR011009 -
Vium7059g00022 975 ProSiteProfiles Protein kinase domain profile. 658 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7059g00022 975 Gene3D Transferase(Phosphotransferase) domain 1 744 973 - -
Vium7059g00022 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 325 626 - -
Vium7059g00022 975 Pfam Leucine Rich repeat 531 548 IPR001611 GO:0005515
Vium7059g00022 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 240 324 - -
Vium7059g00022 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 780 975 - -
Vium7059g00022 975 SMART LRR_typ_2 508 532 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 123 147 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 341 365 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 149 173 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 269 293 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 556 580 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 366 389 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 197 221 IPR003591 -
Vium7059g00022 975 SMART LRR_typ_2 461 484 IPR003591 -
Vium7059g00022 975 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Vium7059g00022 975 SUPERFAMILY L domain-like 212 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7059g00022 Vium-Chr7059 147505 151618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7059g00022 16 967 Receptor kinase-like Gene Family AT2G25790 51.610 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vium7059g00022 PK_Tyr_Ser-Thr 3.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7059g00022 - - gmx:100777118 1617.82