Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7059g00010 ATGGATGAAGACGATAGCCGTGGCCGTAGCGCAGATAAGGTTCCGGGAGCTGAAGATGAAGGCAGCACTGCCCCTCTTCCGGAGAAGGTTCAAGTTGGTGGTTCTCCTTTGTATAGAACTGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAAGTGTATGTTGGTCGGCGGATAGGAATTACGAATTCTAGCGAACGGACTGGTGCCGGTGCTGTTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAACTATGGACCACCATATGAGTGGCAGGTTTACAATGCATTAGGCGGTAGTCATGGTGTTCCACGAGTACATTTCAAGGGACGGCAAGGTGACTACTATATTATGGTAATGGATATGCTTGGTCCCAGTCTGTGGGATGTTTGGAATAACAACTCTCACACCATGTCTACTGAAATGGTAGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGACCCCCAGGAACTCCAGATGAAAAGAAATTGTTTCTGGTTGATCTTGGGTTAGCAACTCGGTGGCGTGATAATTCAACTGGCCTTCATGTTGAATATGATCAGCGTCCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTCCTTCTTCGGGGTCGGCTTCCCTGGCAAGGATATCAGGGGGAAAATAAAGGGTTTCTTGTCTGCAAAAAAAAGATGGCCACCTCTCCAGAAACATTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTCTTTGATGGAATCGTGGGCCCAAATCCAGATATCAGGCCAATAAACACCGAGGGTGCTCAGAAGCTTATATGTCAGGTTGGCCATAAGAGGGGGCGTTTGACCATGGAAGATGATGATGATGAACAGCCTAAAAAAAAGGTTCGAATGGGAATGCCTGCTACACAGTGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTAGCTGATGTGCGGTTAGCCCAACACATTGATAAAGGGAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTACTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTTCCTGCTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAATAATTATTATATTAGTGCCATAGCCGGAGCTCATAATGGATGCTCATTGGTTGTAATGTCTAAAGGTACCCAGTACGTACAACAATCCTATAAAGTCAGTGATTCGTTTCCGTTTAAATGGATCAACAAAAAATGGAGAGAAGGATTTTATGTAACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCACGTGGGGCTGGTTATTCTGATCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAACTGATGAAACTCAGGAGACACTCCGCACATCTGCTTTTCCTAGTGCTCATGTTAAGGATAAATGGGCAAAGAATCTCTATATTGCATCTATTTGCTATGGGAGAACAGTGTCATAA 1818 0.434 MDEDDSRGRSADKVPGAEDEGSTAPLPEKVQVGGSPLYRTERKLGKGGFGQVYVGRRIGITNSSERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCTNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWENNYYISAIAGAHNGCSLVVMSKGTQYVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSAHVKDKWAKNLYIASICYGRTVS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7059g00010 605 FunFam casein kinase 1-like protein HD16 11 361 - -
Vium7059g00010 605 CDD STKc_CK1 38 314 - -
Vium7059g00010 605 Pfam Protein kinase domain 38 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7059g00010 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vium7059g00010 605 MobiDBLite consensus disorder prediction 1 36 - -
Vium7059g00010 605 MobiDBLite consensus disorder prediction 1 16 - -
Vium7059g00010 605 ProSitePatterns Protein kinases ATP-binding region signature. 44 77 IPR017441 GO:0005524
Vium7059g00010 605 Gene3D Transferase(Phosphotransferase) domain 1 14 359 - -
Vium7059g00010 605 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7059g00010 605 SUPERFAMILY Protein kinase-like (PK-like) 38 318 IPR011009 -
Vium7059g00010 605 SMART serkin_6 38 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7059g00010 605 PANTHER CASEIN KINASE-RELATED 38 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7059g00010 Vium-Chr7059 63307 69759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7059g00010 133 314 MAP Kinase Kinase Kinase AT5G50180 25.000 9.26e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vium7059g00010 Pkinase 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7059g00010 - - gmx:100800125 1193.72