Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7053g00008 ATGTCATTTTCGTTGTTCGCCACGCCGCAGCAGCAACATCAACCACAACCGCAGCAGTCTCCTTTTCAACCACAGCAAACTAGTCTGTTCCTTCCGCAGCAGCAGCAGCAGCAGTTTCAACCACAACAACAGCAGCAGCCGCATCAGCCACAACAGCAGTTGTTTTTGTTCACTAACGATAAAACACCCGCTAGTTATAGAACCAATTGGGCGGATCTACATCCTGACTCCCAGAAGATTCTCCTTCAGATAGAGGAGCGGATATTGGAGTATAGGGATGAAAGCCAGAGACTAGATCAGTGTAGTCGTCTTTATGATTCTTCTGTTTCCAACGATGGCTTTGAGCTTGACGCGGGCCATATTGTTCAGGAACTTGGTGGAATTAGCACTGGCATGGAACGACAAAAGACTTTGCTGCAGGAACTGATGTCCATTGTTAAGGAAATGCTACGCAACACAGAGGTTGCTGTTCGTTCCTTTATGATACTACGCCCCAGGTTCCTTCATCCCAGTGGGGGTTCATCAAGTGCCACTGCCCCATCACAGACTCCTGGAGCGACTATAGCACCTGGCTCAAGTGGCCAACCGATAAATGCATCTATAATGCCTGTTTTTGATTTCTACAGTGGTCTTCCAAAGAAACCATCTCCATTTTTACAGCAAACAATTTTAAGATTTGAGAAGTATCTTGGCGAGTGCCATCAGTGGATTGAAGAGTTAGAGCAGCTGCTTCTTTTGGACTCTGAGAGAAATGCTTCCAGTAACGGATCTTCATTACTACAATCTCTTCCCAAGGTCATGACAAATGTGCATGACTTTTTTGTTCATGTGGCTGCGAAGGTGGAGAGCATTCATCAGTTCATTGAATCTATGAAATCATCATACCTAGCTGATCAGCGTCACCGGGGGGAGGTGAATGACCCGTTTTTGGAGGCAGATAGGCGAGAAACTGCTAGACAAGAAGCTGCATCAAAAAGAGTTCATCCAACATTACATTTACCTGCAAATCCACAACCCTCAACTCAAGTTGCTGGGTTGTTTTCTAGTTCAGGGACTCAAGCAGCATTGCCTGCCCCACAGACATCTGCAGCAACTACATCATTGTCATCAGGAAGTGGATTCTCTCTTTTTAGTACACCATCCTCTGCTCCATCGTCTTCTGCGTTGTCATCTCTATTTACGACACCAACTCCTGCTCCAGGACCTCAAACCTCACTTTTTGGTTCTGCAACATCTGTACCTGGCCAGGCATCAACTCCCTCTCTGTTCGGTAATACCACTCCATTGTTTAGTTCAACCCCAGCCACAAATTCACTCTTTTCAACTCCATTTGGTTCAGGCGCTGCAACAGGATCTGGGGCTAGCTTTGGACCTGGATCGAAAAATCCACGGGCGAAATCCAGAACTGCTCGACGCTGA 1419 0.4665 MSFSLFATPQQQHQPQPQQSPFQPQQTSLFLPQQQQQQFQPQQQQQPHQPQQQLFLFTNDKTPASYRTNWADLHPDSQKILLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDAGHIVQELGGISTGMERQKTLLQELMSIVKEMLRNTEVAVRSFMILRPRFLHPSGGSSSATAPSQTPGATIAPGSSGQPINASIMPVFDFYSGLPKKPSPFLQQTILRFEKYLGECHQWIEELEQLLLLDSERNASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQFIESMKSSYLADQRHRGEVNDPFLEADRRETARQEAASKRVHPTLHLPANPQPSTQVAGLFSSSGTQAALPAPQTSAATTSLSSGSGFSLFSTPSSAPSSSALSSLFTTPTPAPGPQTSLFGSATSVPGQASTPSLFGNTTPLFSSTPATNSLFSTPFGSGAATGSGASFGPGSKNPRAKSRTARR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7053g00008 472 MobiDBLite consensus disorder prediction 334 420 - -
Vium7053g00008 472 MobiDBLite consensus disorder prediction 434 457 - -
Vium7053g00008 472 Gene3D - 214 304 - -
Vium7053g00008 472 MobiDBLite consensus disorder prediction 171 193 - -
Vium7053g00008 472 MobiDBLite consensus disorder prediction 306 420 - -
Vium7053g00008 472 MobiDBLite consensus disorder prediction 434 472 - -
Vium7053g00008 472 MobiDBLite consensus disorder prediction 306 326 - -
Vium7053g00008 472 PANTHER NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 5 460 IPR024882 GO:0005643|GO:0006913|GO:0008139|GO:0017056
Vium7053g00008 472 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7053g00008 Vium-Chr7053 44167 49516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7053g00008 54 472 NAC Transcription Factor Family AT4G37130 63.023 1.62e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7053g00008 K14307 - gmx:100776992 695.271