Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7052g00008 ATGAAGGGTACATTTCCAAAGAAGGAAATCTTCACTCAAAAGAAATTTTCAACTTGTTTGCAGGAAATGGAAACAGGATCAAAGTTTTTGGACAATGCAATGATAGGGGGTTCTCGTTCTCTTACTGCCTCTAACCATCTTCATGTGTTAAGAAGTGGGGAAAACTCATCAATAACATCATCTCAACAACTTCTTTCATGTTCAAATTCTACTTCAATGAAAGAAGAGGCACCTTTAGCCACATGGATTAGTCATATCCCTGCAAAGTTCAATGGCCCTCAAGACATAAAAAATGTGAGAGAGAAAAACCGATCAAATTCTATCTTCCCAGCCTCGGACACAAAAAACAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTGACTATGGCACCATGTTTTGATGAGCCTGTTGCTTCTTTAGCCTCTTCTTCTGCCCCACCCAATTTTCCAAACTTGACTTTGGTTTTGCAGGAACCCTCCATGGTGTACTCATCATCATCAAATATGAAAAGTGGTGAAGTCATGTCTGTAACTTCTAACCCCACCTATCAAGTTCCTCACTTTGGGCAAAACCAGCATCAAGGATGTAGTGATGCACACAAAACGAACAAGAATCTGAAGTCTTTCAAAGAGAATTGGTTGAGTAGCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGAAAACTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTGAGAGGAGAATATGCACAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCAGCACTTGTGGAGGCAAAACTACAAGCAATATCTCAAGGTGTTTCTTCTCACAGGAAGCCTACTGACTCACCAGCAGGCTTAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGACAAGAATTCAACCATGAAGGAGTGGCAGTTTGATAATACTGAGAAAAGCAAAAGTATACACCATGATATATCAGATGTGGAAACTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACAGTATTTGGGATGAACTTTTGGTCTCTAATTCATGA 1203 0.4115 MKGTFPKKEIFTQKKFSTCLQEMETGSKFLDNAMIGGSRSLTASNHLHVLRSGENSSITSSQQLLSCSNSTSMKEEAPLATWISHIPAKFNGPQDIKNVREKNRSNSIFPASDTKNSSIPLNLLETLPPLTMAPCFDEPVASLASSSAPPNFPNLTLVLQEPSMVYSSSSNMKSGEVMSVTSNPTYQVPHFGQNQHQGCSDAHKTNKNLKSFKENWLSSTRTQPMKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGLSNKHTDENGKLKSTNDKNSTMKEWQFDNTEKSKSIHHDISDVETVQLSRMPSLDMDSIWDELLVSNS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7052g00008 400 Pfam AP2 domain 234 282 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 CDD AP2 232 292 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 MobiDBLite consensus disorder prediction 338 355 - -
Vium7052g00008 400 Gene3D AP2/ERF domain 233 291 IPR036955 GO:0003700|GO:0006355
Vium7052g00008 400 MobiDBLite consensus disorder prediction 318 336 - -
Vium7052g00008 400 SUPERFAMILY DNA-binding domain 233 291 IPR016177 GO:0003677
Vium7052g00008 400 FunFam Ethylene-responsive transcription factor 2 232 291 - -
Vium7052g00008 400 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 PRINTS Ethylene responsive element binding protein signature 256 272 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
Vium7052g00008 400 MobiDBLite consensus disorder prediction 318 355 - -
Vium7052g00008 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 81 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7052g00008 Vium-Chr7052 53949 55377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7052g00008 87 395 AP2-EREBP Transcription Factor Family AT4G13620 42.633 3.57e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7052g00008 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7052g00008 - - gmx:100820013 598.971