LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7052g00005	ATGGCTATGAACAAAATCCTAAAGCTCATCCAACTTATTCTTCTGATGGCAGTAGCTTCAAAAGCAGTGTCTCAACCCTCTCCAGATTGCCCCAAAAGCTGTGGCAATCTAAGCATACCTTACCCTTTTGGGACACGCGAGGGCTGTTATATGAACGACACTTTCCTCGTCACTTGCAACCATGATAACTCCCCCACGTCCATTCCTCTATTGGGAACAAACAACATATTGGTGCTCAACATATCACTAGAAGATGGGGAAGTTATAGTTTCAAGTCCCGTAGTCCGTGATTGCTATGGCACCAAAAGCAAAAACTCAAACGACCAAAATGGTCTCAATTTGACCCACTTTTCAATCTCACCAAGCAGGAACAAATTCACAGCAGTTGGTTGTGGCACGGTTGGAGTATTCATCGGTTACGATAGCAGCAGAAAACATGTTATAACAAGAGGGTGTGTATCCATGTGCGACACGCTTGGTGAAATCAGAAACGGATCATGCGATGGCATTGGTTGTTGCCAAATCGGTGTTCCCGATGGAGTGTATGGTTTTGCAATGAAAAGTTGGAGTATAAGCAACAACTCCACCGTACGTGACGGTGACTTCAATCCTTGTAACTATGCGTTTACGGTTGCGGAAGGCTATTACAAGTTCGAGACAACAAATCTTAAGAGCCTCGAGAATCCGAGGTTGCCCTTGGTGCTTGATTGGGCTGTGGGAAATCAAACGTGCGAAGAGGCGCAACAACATCCTAGTAGCTATGCGTGCAAGGATAAGAACAGTTATTGCCTCGATTCAACGAATGGGATTGGTTATCGTTGCAAATGCAATCATGGTGGAAACCCTTACCTCTACGATGGTTGCCATGATAAGGATGAATGCGCTTTGAACAGCAATCCATGCATCCACAAGAAAATCTGCAAAAACGCCCCTGGAGAAGGTTTGAAGTGCTCATGTCCAAAGGGCCACGAAGGAGATGGATTGAGAAATGGCCAAGGCTGCAGACCCAAAAGAGACAAAAACACAGGGAATCTTATTCTTATAATTGGATTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCCTGAACATATACCCTCAATTCCGTGAAAGAAAGCTCATGAAAATCAGGGAGAACTATTTTAAGAAAAATGGTGGCATGTTATTGCAAAGGCAGATTGATCTGGTCAATGGCTCAACCGAAAGAGCCACAATTTTCACTGCTGAGGAGCTCAAGAAAGCCACCGACAACTACGATGATGATAGAATCATAGGCAAAGGAGGACATGGAACGGTGTACAAAGGTATATTATCAAATGGCAGTGTTGTTGCCATCAAGAAGGCCATGGTTTCCAACCAAACCGAGATTGGCCAATTCATCAACGAAGTGGTCGTGCTTTCCCAAATCAACCATAGGAATGTCGTCAAACTACTAGGTTGCTGTCTGGAGACTGAGTTTCCTTTGCTTGTTTATGAGTTCATCACCAACGGTACCCTTTGTGAGCATCTACATTTTGAAGGTGAGGCATGTGGTGATAAACACAAACTTTCATGGACAACACGTTTGAGAATTGCAGCAGAGACAGCAGAATCTCTTGCATACTTGCATTCTTCTGTTTCCACACCCATCATACATAGAGATGTTAAAACAGCAAATATTCTTCTAGATGACAACCTCACAGCAAAAGTTTCTGACTTTGGTGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAGTTAACAACGTTGGTGCAAGGAACCATGGGTTACCTTGATCCTGAGTACTTCCAAACAAGCCAACTAACCGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTTCTTGCAGAACTATTGACAAGTAAGAAGGCACTTTCGTTCCTTAGGCCTCAGAGTCATAGGAATTTGTCCATGTATTTTGTTTCTGCAATGAATGAGGGTCGGTTGGATCAAATATTGGACAAGGAAATCGTGAGTGATGCAAGTGTTGAGTATGTGATAGAAGTTGCTAATCTAGCCAAAAGGTGTCTTAGGTTGCATGGAGAAGAAAGACCAAGCATGAAAGAAGTTGCTATGGAGTTGGAGGGAATAAGGATCATTGAAAAACATTCACTGGGAGGAGCAAAAGATGTTGCATCTCAGGAAGAGACAGAGAGCTTTCTCGGACCACGTTCTCATTTAAGTATTGATCATGGTGATGGTACAAGTAGCAGTACAATTTCTAGGTTCTATGATTTGCATAACCAGATTTTGGAACCACTTGAAGATGGACGATGA	2280	0.4316	MAMNKILKLIQLILLMAVASKAVSQPSPDCPKSCGNLSIPYPFGTREGCYMNDTFLVTCNHDNSPTSIPLLGTNNILVLNISLEDGEVIVSSPVVRDCYGTKSKNSNDQNGLNLTHFSISPSRNKFTAVGCGTVGVFIGYDSSRKHVITRGCVSMCDTLGEIRNGSCDGIGCCQIGVPDGVYGFAMKSWSISNNSTVRDGDFNPCNYAFTVAEGYYKFETTNLKSLENPRLPLVLDWAVGNQTCEEAQQHPSSYACKDKNSYCLDSTNGIGYRCKCNHGGNPYLYDGCHDKDECALNSNPCIHKKICKNAPGEGLKCSCPKGHEGDGLRNGQGCRPKRDKNTGNLILIIGLSLSLSLLAVVVGCLNIYPQFRERKLMKIRENYFKKNGGMLLQRQIDLVNGSTERATIFTAEELKKATDNYDDDRIIGKGGHGTVYKGILSNGSVVAIKKAMVSNQTEIGQFINEVVVLSQINHRNVVKLLGCCLETEFPLLVYEFITNGTLCEHLHFEGEACGDKHKLSWTTRLRIAAETAESLAYLHSSVSTPIIHRDVKTANILLDDNLTAKVSDFGASKLVPLDQTQLTTLVQGTMGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTSKKALSFLRPQSHRNLSMYFVSAMNEGRLDQILDKEIVSDASVEYVIEVANLAKRCLRLHGEERPSMKEVAMELEGIRIIEKHSLGGAKDVASQEETESFLGPRSHLSIDHGDGTSSSTISRFYDLHNQILEPLEDGR	759

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7052g00005	759	SUPERFAMILY	Protein kinase-like (PK-like)	405	696	IPR011009	-
	Vium7052g00005	759	Gene3D	Laminin	290	329	-	-
	Vium7052g00005	759	ProSiteProfiles	EGF-like domain profile.	290	326	IPR000742	-
	Vium7052g00005	759	Gene3D	Phosphorylase Kinase; domain 1	388	496	-	-
	Vium7052g00005	759	CDD	STKc_IRAK	427	698	-	-
	Vium7052g00005	759	MobiDBLite	consensus disorder prediction	718	737	-	-
	Vium7052g00005	759	ProSiteProfiles	Protein kinase domain profile.	421	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7052g00005	759	FunFam	Wall-associated receptor kinase 2	497	719	-	-
	Vium7052g00005	759	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	546	558	IPR008271	GO:0004672\|GO:0006468
	Vium7052g00005	759	Pfam	Wall-associated receptor kinase galacturonan-binding	30	90	IPR025287	GO:0030247
	Vium7052g00005	759	Pfam	Protein kinase domain	421	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7052g00005	759	ProSitePatterns	Protein kinases ATP-binding region signature.	427	450	IPR017441	GO:0005524
	Vium7052g00005	759	SUPERFAMILY	EGF/Laminin	288	336	-	-
	Vium7052g00005	759	CDD	EGF_CA	290	326	-	-
	Vium7052g00005	759	Gene3D	Transferase(Phosphotransferase) domain 1	497	716	-	-
	Vium7052g00005	759	FunFam	Wall-associated receptor kinase 2	391	496	-	-
	Vium7052g00005	759	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	19	709	IPR045274	GO:0007166
	Vium7052g00005	759	SMART	serkin_6	421	698	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7052g00005	Vium-Chr7052	35488	38879	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7052g00005	7	700	Receptor kinase-like Gene Family	AT1G21230	45.804	0.0	575

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vium7052g00005		Pkinase	9.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7052g00005	-		-	vun:114190859	1357.43