Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7052g00002 ATGTTACATCCTAGTCCTGATTTTATTCCATATGTACCCATGAATGAAGGTACAAGTTCAGTGACACAAGCTGAAGAGAAAGAGAAGTTACTAAGTCAACACTATGACCCAAATATATTTATGCCTGTTTTTACTGATTTATGGCTATATTTTGGGGGCACAAAGGCTATGGATCTTGAAGAAGTGGTAAAGGATGAAGACAGTGAGGATGAAATTAATGAGGGCGCTCGAGTGATTGAAGATAGAAGAAAACTTGAGCTTCTTGGTCTTTCTGAGGATCAGAAGCGGCTCGTAACTATGTGGACCTCATTTGTTAAGAAACATCGTGTGCTGGTAGATGGCCATATGAATTGGGCATACGAAGTTTTCACAAAATATCATTGTGCTGAGCTTGTCGATTCCACCCCATTAGCCTGGGCTTGGAGATTGTTTATGATAAAACTATATGATATGGGTCTTCTAAAGCCAAAGACTGTGGCTGCATGCGCTGCCATTCTTCAACAATACAGGGAACAGAAATAA 522 0.4004 MLHPSPDFIPYVPMNEGTSSVTQAEEKEKLLSQHYDPNIFMPVFTDLWLYFGGTKAMDLEEVVKDEDSEDEINEGARVIEDRRKLELLGLSEDQKRLVTMWTSFVKKHRVLVDGHMNWAYEVFTKYHCAELVDSTPLAWAWRLFMIKLYDMGLLKPKTVAACAAILQQYREQK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7052g00002 173 Pfam VEFS-Box of polycomb protein 55 164 IPR019135 -
Vium7052g00002 173 PANTHER POLYCOMB GROUP PROTEIN 48 171 - -
Vium7052g00002 173 CDD VEFS-box_EMF2-like 57 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7052g00002 Vium-Chr7052 1784 3101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7052g00002 55 166 C2H2 Transcription Factor Family AT2G35670 42.478 1.50e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7052g00002 - - vum:124844574 354.755