Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7050g00002 ATGGCAATAATTGCAAATACAATTTCTACTCTCATCATATCCTTCAACCTCATCATCTCACTTGGGATCTTGGGCATTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGATATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTCAATGACGGAGCTTCCTGTGGCGAGTGTTACAAAATCATATGTGATTACAAAGCAGACTCCAGATGGTGCATCAAAGGAAGATCTGTCACCATAACCGCCACAAATTTTTGCCCTCCCAATTTTGCTCTTCCAAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCTGCATGGGAAAAGATTGGTATTTACAGAGGAGGAATCGTGCCCGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGGTCAGCAATGTGGGTGGGGCTGGATCCATCCAATCTGTGTCCATTAAAGGATCGAAAACTGATTGGATGGCTATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAACGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACTACTGATGGAGAAACCAGAGTTTTCCAAAATATAGTTCCAGCAAGTTGGAGTTTTGGCCAAACTTTCTCCAGCCCAGTTCAGTTCTAA 780 0.4513 MAIIANTISTLIISFNLIISLGILGIAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLVSNVGGAGSIQSVSIKGSKTDWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPASWSFGQTFSSPVQF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7050g00002 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Vium7050g00002 259 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Vium7050g00002 259 SMART dpbb_1 68 156 IPR007112 -
Vium7050g00002 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Vium7050g00002 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Vium7050g00002 259 SUPERFAMILY Barwin-like endoglucanases 24 184 IPR036908 -
Vium7050g00002 259 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Vium7050g00002 259 Gene3D - 24 162 IPR036908 -
Vium7050g00002 259 CDD DPBB_EXPA_N 32 161 - -
Vium7050g00002 259 PANTHER EXPANSIN-A15 27 255 IPR002963 GO:0009664
Vium7050g00002 259 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Vium7050g00002 259 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Vium7050g00002 259 FunFam Expansin 23 162 - -
Vium7050g00002 259 Gene3D - 166 259 IPR036749 -
Vium7050g00002 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 166 IPR007112 -
Vium7050g00002 259 FunFam Expansin 166 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7050g00002 Vium-Chr7050 3515 5222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7050g00002 68 259 Expansin Gene Family AT1G20190 83.854 4.66e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7050g00002 - - var:108338070 521.931