LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7050g00001	ATGGGCCGAGTTATGTTTCTTTTGGGTAGCCTCATTGGATTATGCAGCTTCACAATCACTACCTTTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGATATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTCAATGACGGAGCTTCCTGTGGCGAGTGTTACAAAATCATATGTGATTACAAAGCAGACTCCAGATGGTGCATCAAAGGAAGATCTGTCACCATAACCGCCACAAATTTTTGCCCTCCCAATTTTGCTCTTCCAAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCTGCATGGGAAAAGATTGGTATTTACAGAGGAGGAATCGTGCCCGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGGTCAGCAATGTGGGTGGGGCTGGATCCATCCAATCTGTGTCCATTAAAGGATCGAAAACTGATTGGATGGCTATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAACGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACTACTGATGGAGAAACCAGAGTTTTCCAAAATATAGTTCCAGCAAGTTGGAGTTTTGGCCAAACTTTCTCCAGCCCAGTTCAGTTCTAA	768	0.457	MGRVMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLVSNVGGAGSIQSVSIKGSKTDWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPASWSFGQTFSSPVQF	255

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7050g00001	255	Gene3D	-	16	158	IPR036908	-
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	199	213	IPR007118	GO:0005576
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	28	43	IPR007118	GO:0005576
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	145	161	IPR007118	GO:0005576
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	46	64	IPR007118	GO:0005576
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	68	86	IPR007118	GO:0005576
	Vium7050g00001	255	PRINTS	Expansin/Lol pI family signature	237	251	IPR007118	GO:0005576
	Vium7050g00001	255	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	172	251	IPR007117	-
	Vium7050g00001	255	Pfam	Expansin C-terminal domain	163	240	IPR007117	-
	Vium7050g00001	255	PANTHER	EXPANSIN-A15	19	251	IPR002963	GO:0009664

Showing 1 to 10 of 28 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7050g00001	Vium-Chr7050	3513	5222	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7050g00001	64	255	Expansin Gene Family	AT1G20190	83.854	9.60e-123	345

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7050g00001	-		-	var:108338070	541.191

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