Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7050g00001 ATGGGCCGAGTTATGTTTCTTTTGGGTAGCCTCATTGGATTATGCAGCTTCACAATCACTACCTTTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGATATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTCAATGACGGAGCTTCCTGTGGCGAGTGTTACAAAATCATATGTGATTACAAAGCAGACTCCAGATGGTGCATCAAAGGAAGATCTGTCACCATAACCGCCACAAATTTTTGCCCTCCCAATTTTGCTCTTCCAAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCTGCATGGGAAAAGATTGGTATTTACAGAGGAGGAATCGTGCCCGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGGTCAGCAATGTGGGTGGGGCTGGATCCATCCAATCTGTGTCCATTAAAGGATCGAAAACTGATTGGATGGCTATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAACGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACTACTGATGGAGAAACCAGAGTTTTCCAAAATATAGTTCCAGCAAGTTGGAGTTTTGGCCAAACTTTCTCCAGCCCAGTTCAGTTCTAA 768 0.457 MGRVMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLVSNVGGAGSIQSVSIKGSKTDWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPASWSFGQTFSSPVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7050g00001 255 Gene3D - 16 158 IPR036908 -
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vium7050g00001 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vium7050g00001 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Vium7050g00001 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vium7050g00001 255 PANTHER EXPANSIN-A15 19 251 IPR002963 GO:0009664
Vium7050g00001 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Vium7050g00001 255 CDD DPBB_EXPA_N 28 157 - -
Vium7050g00001 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Vium7050g00001 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Vium7050g00001 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Vium7050g00001 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vium7050g00001 255 FunFam Expansin 162 255 - -
Vium7050g00001 255 SUPERFAMILY Barwin-like endoglucanases 20 180 IPR036908 -
Vium7050g00001 255 FunFam Expansin 18 158 - -
Vium7050g00001 255 Gene3D - 162 255 IPR036749 -
Vium7050g00001 255 SMART dpbb_1 64 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7050g00001 Vium-Chr7050 3513 5222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7050g00001 64 255 Expansin Gene Family AT1G20190 83.854 9.60e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7050g00001 - - var:108338070 541.191