Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7041g00002 ATGCAGTGTTCGGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGAGATGGGAATCCAAAAACACCTTCTGGATTGCGGGAAGAAAGAAGTCCTTCACATTGGCAGAGGCCTGGGGAGAGAAGTGGTCATAATGTTGTTTCTGAAAAAACTTTTGAGGGAAGGAAGAAATTCCAACCGTCAAATGCAATTCCTGCTACACGAAACAGTGTTCCTGCTCCTGCTCCTCCAAAAGCACCTGAGCAAGTAACTCCTCCTATTACCAAACCTCAGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCACAAGCTGAATCTTCAAAGCAGGCTATGGATGCAGCTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGTCCCGAAAGAAAATGGCTCTGAGTCGGCCAGTACAACTACTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCCGCCAAAAGTAGCTGATAATAGTGCTCTGTCTGCAGCTGGTATTGAGGATCTTTTCAAAGATTCACCTATGATGCCAAGCTTAACTCCAGAAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAGCAGCTTGCCATGCTACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTTCTGGTGGGGATCTCAAGTATCCTGCGGGCATACAAGAACCTAGACCAAATGTTCCTGTGCAAAGTTGGCCAGCTACTGGCTACTCGATTTCTGGAGCATTGCCCATGCAGGTGCAGATTACGAACATGACCCCAGCACATTTTGCTGGGAGCTCTGTACAATATCAACCATCTAGTTTCTATGGTATGGGGCAAGTTCCACCTCCAGTTAACGGTGTGATGGCGACAATGGGAGCCAGTAAACCCCAGTCAGGAGCTCCAGTGTCATCTAGTACTACACAGTCAGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGGATGTTTGCTAAACACTGA 1257 0.4519 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNPKTPSGLREERSPSHWQRPGERSGHNVVSEKTFEGRKKFQPSNAIPATRNSVPAPAPPKAPEQVTPPITKPQPVEKVEPLAPQPQAESSKQAMDAAQNTPPKVDYATDLFNMLSMDVPKENGSESASTTTDDNLWAGFQSAAEVSTAEKTSPPPKVADNSALSAAGIEDLFKDSPMMPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLQQQSLLMAAAAKSSGGDLKYPAGIQEPRPNVPVQSWPATGYSISGALPMQVQITNMTPAHFAGSSVQYQPSSFYGMGQVPPPVNGVMATMGASKPQSGAPVSSSTTQSAKDYDFSSLTQGMFAKH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7041g00002 418 SUPERFAMILY ArfGap/RecO-like zinc finger 1 73 IPR037278 -
Vium7041g00002 418 CDD ArfGap 1 66 - -
Vium7041g00002 418 Gene3D Arf GTPase activating protein 1 78 IPR038508 -
Vium7041g00002 418 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 79 IPR001164 GO:0005096
Vium7041g00002 418 MobiDBLite consensus disorder prediction 128 145 - -
Vium7041g00002 418 MobiDBLite consensus disorder prediction 382 401 - -
Vium7041g00002 418 Pfam Putative GTPase activating protein for Arf 2 72 IPR001164 GO:0005096
Vium7041g00002 418 MobiDBLite consensus disorder prediction 71 179 - -
Vium7041g00002 418 MobiDBLite consensus disorder prediction 71 114 - -
Vium7041g00002 418 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 418 IPR044520 GO:0005096
Vium7041g00002 418 SMART arf_gap_3 2 79 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7041g00002 Vium-Chr7041 13647 18571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7041g00002 1 72 C2H2 Transcription Factor Family AT4G05330 43.750 1.15e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7041g00002 K12486 - gmx:100780452 644.039