Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7041g00001 ATGAACGGTAAGGCTAACGTCACCAAAGAACTCAACGCTAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGACAATAGAGAATGTGCTGACTGCAAAGCTAAAGGTCCCAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGTATGCAGTGTTCGGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGAGATGGGAATCCAAAAACACCTTCTGGATTGCGGGAAGAAAGAAGTCCTTCACATTGGCAGAGGCCTGGGGAGAGAAGTGGTCATAATGTTGTTTCTGAAAAAACTTTTGAGGGAAGGAAGAAATTCCAACCGTCAAATGCAATTCCTGCTACACGAAACAGTGTTCCTGCTCCTGCTCCTCCAAAAGCACCTGAGCAAGTAACTCCTCCTATTACCAAACCTCAGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCACAAGCTGAATCTTCAAAGCAGGCTATGGATGCAGCTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGTCCCGAAAGAAAATGGCTCTGAGTCGGCCAGTACAACTACTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCCGCCAAAAGTAGCTGATAATAGTGCTCTGTCTGCAGCTGGTATTGAGGATCTTTTCAAAGATTCACCTATGATGCCAAGCTTAACTCCAGAAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAGCAGCAGCTTGCCATGCTACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTTCTGGTGGGGATCTCAAGTATCCTGCGGGCATACAAGAACCTAGACCAAATGTTCCTGTGCAAAGTTGGCCAGCTACTGGCTACTCGATTTCTGGAGCATTGCCCATGCAGGTGCAGATTACGAACATGACCCCAGCACATTTTGCTGGGAGCTCTGTACAATATCAACCATCTAGTTTCTATGGTATGGGGCAAGTTCCACCTCCAGTTAACGGTGTGATGGCGACAATGGGAGCCAGTAAACCCCAGTCAGGAGCTCCAGTGTCATCTAGTACTACACAGTCAGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGGATGTTTGCTAAACACTGA 1410 0.4475 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNPKTPSGLREERSPSHWQRPGERSGHNVVSEKTFEGRKKFQPSNAIPATRNSVPAPAPPKAPEQVTPPITKPQPVEKVEPLAPQPQAESSKQAMDAAQNTPPKVDYATDLFNMLSMDVPKENGSESASTTTDDNLWAGFQSAAEVSTAEKTSPPPKVADNSALSAAGIEDLFKDSPMMPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLQQQSLLMAAAAKSSGGDLKYPAGIQEPRPNVPVQSWPATGYSISGALPMQVQITNMTPAHFAGSSVQYQPSSFYGMGQVPPPVNGVMATMGASKPQSGAPVSSSTTQSAKDYDFSSLTQGMFAKH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7041g00001 469 CDD ArfGap 19 117 - -
Vium7041g00001 469 MobiDBLite consensus disorder prediction 179 196 - -
Vium7041g00001 469 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vium7041g00001 469 MobiDBLite consensus disorder prediction 122 230 - -
Vium7041g00001 469 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Vium7041g00001 469 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vium7041g00001 469 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vium7041g00001 469 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vium7041g00001 469 MobiDBLite consensus disorder prediction 433 452 - -
Vium7041g00001 469 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vium7041g00001 469 MobiDBLite consensus disorder prediction 122 165 - -
Vium7041g00001 469 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vium7041g00001 469 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 469 IPR044520 GO:0005096
Vium7041g00001 469 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Vium7041g00001 469 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7041g00001 Vium-Chr7041 13311 18571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7041g00001 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 1.18e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7041g00001 K12486 - gmx:100789910 742.651