Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium703g00016 ATGAGTTTCTTTTCATGTTGCACATCATCTGAGAAGATCAACAAGAACTCCTTCAGAGGGAGCAGCAGGGACTTCAATCATGCAAAATCTATGCCATCATGTGGTACCATGTGTTTTAAATCTGATAACAGCAAGAGGAAGTTCATAGAACAAGAAATTGCAAAGATTGGAAGAGGGAATATTACCTCTCAGACTTTTTCTTATCATGAGCTATGTGTTGCAACTGGGAATTTTCACCCCGAGAACATGATTGGTGAAGGAGGCTTTGGAAGGGTGTATAAAGGACGCATTAAAAGCATAAACAAGGTTGTAGCTGTGAAGAAACTTAACAGGAATGGATTCCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTCTTGCACCACCCTAACCTTGTTAATTTGGTAGGGTATTGTGCAGATGGTGAACAAAGGATTTTGGTATACGAATACATGGTGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTGAGGACAGAAAGCCTTTGGATTGGCAAACCAGAATGAACATAGCAGCTGGTGCAGCTAAAGGACTTGAATACTTGCATGAGGTAGCAAATCCACCAGTGATATACCGTGATTTCAAATCATCAAACATACTATTGGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAAACTCATGTATCCACCAGGGTCATGGGAACTTATGGCTATTGTGCTCCTGAGTATGCCTCAACAGGCCAATTGACTACAAAATCAGATATATACAGCTTCGGAGTGGTATTTCTAGAGATGATCACAGGAAGAAGAGTTCTTGATCAATCAAGATCATCTGAGGAGCAAAACTTAGTCACTTGGGCACAGCCACTGTTCAAAGACAGAAGGAAATTTACATCAATGGCTGATCCATTGCTGAAAGGGAACTACCCTGCAAAGGGTCTACACCAAGCACTAGCAGTTGCAGCAATGTGCCTTCAGGAGGAAGCACATACTCGACCTTTGATCAGTGACGTGGTTACAGCCATTGATGTTTTAGCCAAGACGCAGATGCAAGTGGGAAAACAGCAACATGCAACAGACACTTTTTTGGAGGACAAAGAACGCAGCTAA 1140 0.4158 MSFFSCCTSSEKINKNSFRGSSRDFNHAKSMPSCGTMCFKSDNSKRKFIEQEIAKIGRGNITSQTFSYHELCVATGNFHPENMIGEGGFGRVYKGRIKSINKVVAVKKLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGEQRILVYEYMVNGSLEDHLLELPEDRKPLDWQTRMNIAAGAAKGLEYLHEVANPPVIYRDFKSSNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDIYSFGVVFLEMITGRRVLDQSRSSEEQNLVTWAQPLFKDRRKFTSMADPLLKGNYPAKGLHQALAVAAMCLQEEAHTRPLISDVVTAIDVLAKTQMQVGKQQHATDTFLEDKERS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium703g00016 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Vium703g00016 379 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Vium703g00016 379 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Vium703g00016 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vium703g00016 379 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium703g00016 379 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Vium703g00016 379 Gene3D Phosphorylase Kinase; domain 1 63 154 - -
Vium703g00016 379 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Vium703g00016 379 CDD STKc_IRAK 84 349 - -
Vium703g00016 379 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium703g00016 379 PANTHER OS07G0668900 PROTEIN 24 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium703g00016 Vium-Chr703 85936 88289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium703g00016 60 356 Glycoside Hydrolase AT3G07070 70.707 8.72e-160 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium703g00016 Pkinase 9.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium703g00016 - - gmx:100798032 678.707