Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7030g00001 ATGGAGAAAGATCACAACTATTCGGCACCGGTATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGAACACGACCAACACCACCTTTATCCACCAAATCACCATCAACAGCAGCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGGTCAATGGTGGATTACATGCCTCAAACACCACCACCACCACCACATGGCTTTTACGGTGGTCCTAGCACTGGCACAATATCCTATGATAAATTGAGTTTTGCAGACGTGATGCAGTTTGCGGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCGGTGTTACACGACAAGATGGAGGAAGAGCAGACTCTGATGGTGAACGAGGAGCCTGATGGTGAAGCAGAAAATCACGATGAGAGGTTCAAGTTGGTGGATGTGGAGGAGAAGTCAAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGCTTTCTGATGACAACAATTCCGTGCAGATTCGGTTTCTAGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCGAGAACTGTTAAGACAAGTGAGGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTCAGATCACTCATGCCTGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGAACCCTCCATTGCACAACAACAACAACAACCTCCTTTCTTTCCACCATTGGCAATTCCGAAAGAGCAGATGAAGCTGGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCATGTTTGGCTGATGTTGAAGTCAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTCGAAGATCTGCAACTGATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTGAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTGCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1287 0.4514 MEKDHNYSAPVSMPPSFNTLDYSLEHDQHHLYPPNHHQQQLMKFQASGDENNSGSMVDYMPQTPPPPPHGFYGGPSTGTISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLHDKMEEEQTLMVNEEPDGEAENHDERFKLVDVEEKSRVGEEGMMMREDEETRLSDDNNSVQIRFLGQEETQKNAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGEPSIAQQQQQPPFFPPLAIPKEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7030g00001 428 PANTHER TRANSCRIPTION FACTOR FAMA 141 419 IPR044283 GO:0003700|GO:0010052
Vium7030g00001 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 288 IPR036638 GO:0046983
Vium7030g00001 428 MobiDBLite consensus disorder prediction 199 223 - -
Vium7030g00001 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 272 IPR011598 GO:0046983
Vium7030g00001 428 SMART finulus 227 278 IPR011598 GO:0046983
Vium7030g00001 428 Pfam Helix-loop-helix DNA-binding domain 222 273 IPR011598 GO:0046983
Vium7030g00001 428 FunFam Basic helix-loop-helix transcription factor 212 287 - -
Vium7030g00001 428 MobiDBLite consensus disorder prediction 191 223 - -
Vium7030g00001 428 CDD bHLH_AtFAMA_like 224 291 - -
Vium7030g00001 428 Gene3D - 212 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7030g00001 Vium-Chr7030 17001 18922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7030g00001 46 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.472 9.85e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium7030g00001 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7030g00001 K26213 - gmx:100813515 669.077