Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7017g00001 ATGATGTTCGCAAAGCTTGTAACATTTCAGTATATTCTCACCACCTTTTTCTTTTCACTTTTAAGGTTCTATTCCTCGGAAGTTTCTGGTGTATCTTTATCCAACGGTACTGTTATGTTTGGCTATGAAGCTGTCGAAGATGAAAACATTGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGATAACCAAAGCCAGGTTTCCTTGTCTTCTTGGTCTACTTTCACTACCCCTTGCAAGTGGAAGGGGATAGTTTGTGATGAATCCAACTCTGTCAGCACTATAAATCTTAAAAACTTTGGACTACAAGGTACACTTCTCAATCTAAACTTGTCATCCTTTCCTAAGCTTCTGAGGTTGTATGTAAGTTACAACAACCTCAGTGGACCTATTCCTCGTCAAATTGGTAACATGTCCAAAATTTCTGTGTTGGAAATGAGACATAATTATTTTAGTGATTCCATCCCCCTGACAATTGGAATGTTGACAAATCTTGTTACACTTGATTTATCATCCAACCTTCTCTCTGGTACAATCCCTTCACTTAGAAACTTAACAAATTTAGAACACCTTATCCTCTTCCGCAACCTTCTCTCTGGTCCCATTCCTGAGGATTTGGGAGGACTTCATCATCTCAGAACAATCAAGTTGTTAGATAATCATATTTCTGGGCCAATCCCTTCTTCCATAGGAGACCTGCCTAATTTGGTGAAACTTCAGCTCACTCGAAATATACTAAACGGGTCAATTCCTTCCTCTCTTGGAAACTTGACAACACTCGTTGAATTGTCCATAGCTGAAAACAAGCTTTCTGGATCAATTCCTGCTTCCATAGGAAACTTGGTCTATCTAGAAAGGCTTAACCTTGCACAAAACAAACTTTCTGGACATATTCCCTCTACCTTCAGAAATTTGACTAAGCTTACCTTTCTATTACTTTATGTGAACAAACTTACCGGAAGCTTCTCAATAGCAACAAGTAACCTGACCAATTTAGTAAACTTACAACTAAGCTATAATCATTTCACTGGTCCTTTGCCACAATATATTTGCCTTGGAGGGTCACTTCAAAATTTTGCAGCCAATGAAAATCGTTTGACTGGTCCAATTCCATCAAGTTTGAAGAACTGCTCTAGTCTTATGAGGCTCAACCTTGCAAAAAATATGTTGATGGGAAATATTCCAAATGATTTTGGTCTGTATCCAAATTTGAAATACATAGATCTGAGTAGAAATGCCTTCAACGGCAACCTTTCATCAAATTGGGTCAAATGTCATAATCTCACAGGCCTAATTATCTCATACAACAGATTATTCGGTGGTATACCCCCAGAGTTAGGCCAGGCACCTAAATTACAAATGCTTGAACTTTCTTCAAATCGTCTAACAGGAAAGATTCCAAAAGAACTTGGGAACTTGACCCAATTGTTTCACCTCTCCATAAGTAAGAACAATCTTTCAGGCAATATTCCCATTGAAATTGGTTCCTTAAAGAACCTTCAGCTCTTTGATCTTGCAACAAATAATTTAAGCGGTCCAATCCCAAAACAGCTCGGCAGGTTGCTCAAGTTAAATCACTTGAACTTAAGCCATAACAATTTCACGGAAAGCATTCCATCTGAATTTAGCCAATTGCAACATCTTCGAGAACTTGATCTTAGTGGGAATTCTTTGAATGGAAAAATTCCAGCAACACTTGGAAAATTGAAGATGTTGGAAAACTTGAACCTCTCCCACAACAATCTCAGTGGAAACATTTCTGCCAGTTTTAAGAATATGTTCAGTTTGACAAATGTTGACATATCTAACAACCAGTTAGAGGGTCCAATTCCTAACAATCGAGCCTTTCTTAATGCTCCATTTCAAGCACTGCAAAACAACAAAAACTTGTGTGGCCATGCTTTTGGGCTGATGCCTTGCCCGCAGGTCTTGAGCCACAGTCCTAATAATATCAAGACCATGATGTTTTTACTATTCCTTGCTTTGGGTGCACTATTTGTGGTTGGAGTTTCACTATATATTCATTCGCAAAAAGCAAGAAAAAAGAAAAAGCAAGAGAAAGAAGAACAAAATCGAGATCTTTTTTCTATATTGCATTATGATGGGAAAATAGTGCATGAAACCATCATCGAAGCAACAAATAATTTCGATGAAAGATATCTCATCGGAAAAGGAGGGTTTGGAGGTGTTTATAAGGCCATCTTACCCTCTGGCCAGATTGTTGCTGTGAAGAAACTTCAGGTTGAAGTTGACAGGGAGATGGTTGATTTTAAGGCTTTTACATCTGAAGTTCGAACCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCATGGGTTTTGTGAACATCCACGCTATTGTTTCTTGGTTTATGAGTTCGTAGAAGGTGGCAGCTTGGATAAAGTACTAAGCAGCGAAACACATGCAGCAATGTTTGATTGGAATAAGAGGGTTAACGTTGTTAAAGGAGTGGCAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATCATTCATCGAGACATATCAAGCAAGAATGTTCTTATAGATTTGGAATATGAAGCTCGCTTATCTGACTTTGGAACAGCAAAGATTCTGAACCCTAATTCACGTAATTTAACTTCGTTTGCAGGCACTTGTGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGACGTGTTCAGTTTTGGGGTGCTTTGTTTGGAAATAATAATGGGAAATCACCCAGGAGATCTGATTTCTTCTATGCATTCACCATCTTCAACATCAGTAACAGCTAATTTGCTATTGAAGGACGTGATGGACCAACGACTACCTCTTCCAGTGATGCCAGTTGTTAAGGAGGTGGTCATCATTGCAAAAGTGGCATTTGCTTGTTTGAATGAAAGACCACTTTCTCGTCCAACCATGGAAGATGTTTATAACAAGTTTGTTATGCCTAAGTCACCTTTAACGAGGGAGACACTCAACACCATTGTACTTGGACAACTTCAGAATGATTGA 3033 0.3867 MMFAKLVTFQYILTTFFFSLLRFYSSEVSGVSLSNGTVMFGYEAVEDENIEASALLKWKASLDNQSQVSLSSWSTFTTPCKWKGIVCDESNSVSTINLKNFGLQGTLLNLNLSSFPKLLRLYVSYNNLSGPIPRQIGNMSKISVLEMRHNYFSDSIPLTIGMLTNLVTLDLSSNLLSGTIPSLRNLTNLEHLILFRNLLSGPIPEDLGGLHHLRTIKLLDNHISGPIPSSIGDLPNLVKLQLTRNILNGSIPSSLGNLTTLVELSIAENKLSGSIPASIGNLVYLERLNLAQNKLSGHIPSTFRNLTKLTFLLLYVNKLTGSFSIATSNLTNLVNLQLSYNHFTGPLPQYICLGGSLQNFAANENRLTGPIPSSLKNCSSLMRLNLAKNMLMGNIPNDFGLYPNLKYIDLSRNAFNGNLSSNWVKCHNLTGLIISYNRLFGGIPPELGQAPKLQMLELSSNRLTGKIPKELGNLTQLFHLSISKNNLSGNIPIEIGSLKNLQLFDLATNNLSGPIPKQLGRLLKLNHLNLSHNNFTESIPSEFSQLQHLRELDLSGNSLNGKIPATLGKLKMLENLNLSHNNLSGNISASFKNMFSLTNVDISNNQLEGPIPNNRAFLNAPFQALQNNKNLCGHAFGLMPCPQVLSHSPNNIKTMMFLLFLALGALFVVGVSLYIHSQKARKKKKQEKEEQNRDLFSILHYDGKIVHETIIEATNNFDERYLIGKGGFGGVYKAILPSGQIVAVKKLQVEVDREMVDFKAFTSEVRTLTEIKHRNIVKLHGFCEHPRYCFLVYEFVEGGSLDKVLSSETHAAMFDWNKRVNVVKGVANALYHMHHGCFPPIIHRDISSKNVLIDLEYEARLSDFGTAKILNPNSRNLTSFAGTCGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGNHPGDLISSMHSPSSTSVTANLLLKDVMDQRLPLPVMPVVKEVVIIAKVAFACLNERPLSRPTMEDVYNKFVMPKSPLTRETLNTIVLGQLQND 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7017g00001 1010 ProSitePatterns Protein kinases ATP-binding region signature. 723 746 IPR017441 GO:0005524
Vium7017g00001 1010 Gene3D Ribonuclease Inhibitor 353 643 IPR032675 -
Vium7017g00001 1010 Gene3D Transferase(Phosphotransferase) domain 1 796 997 - -
Vium7017g00001 1010 Gene3D Ribonuclease Inhibitor 242 352 IPR032675 -
Vium7017g00001 1010 PANTHER LEUCINE RICH REPEAT KINASE 2 256 993 - -
Vium7017g00001 1010 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Vium7017g00001 1010 Gene3D Phosphorylase Kinase; domain 1 675 795 - -
Vium7017g00001 1010 SMART LRR_typ_2 163 185 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 570 593 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 522 545 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 474 498 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 330 354 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 282 305 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 115 139 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 234 258 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 546 569 IPR003591 -
Vium7017g00001 1010 SMART LRR_typ_2 186 210 IPR003591 -
Vium7017g00001 1010 ProSitePatterns Tyrosine protein kinases specific active-site signature. 841 853 IPR008266 GO:0004672|GO:0006468
Vium7017g00001 1010 SUPERFAMILY RNI-like 96 416 - -
Vium7017g00001 1010 Gene3D Ribonuclease Inhibitor 48 241 IPR032675 -
Vium7017g00001 1010 FunFam Leucine-rich repeat receptor protein kinase MSP1 680 795 - -
Vium7017g00001 1010 FunFam Nuclear pore complex protein NUP107 48 204 - -
Vium7017g00001 1010 ProSiteProfiles Leucine-rich repeat profile. 524 546 IPR001611 GO:0005515
Vium7017g00001 1010 SMART LRR_sd22_2 546 578 - -
Vium7017g00001 1010 SMART LRR_sd22_2 163 191 - -
Vium7017g00001 1010 SMART LRR_sd22_2 282 308 - -
Vium7017g00001 1010 SMART LRR_sd22_2 450 476 - -
Vium7017g00001 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 330 645 - -
Vium7017g00001 1010 SUPERFAMILY Protein kinase-like (PK-like) 704 986 IPR011009 -
Vium7017g00001 1010 SUPERFAMILY L domain-like 383 634 - -
Vium7017g00001 1010 PRINTS Leucine-rich repeat signature 166 179 - -
Vium7017g00001 1010 PRINTS Leucine-rich repeat signature 546 559 - -
Vium7017g00001 1010 Pfam Leucine Rich Repeat 573 594 IPR001611 GO:0005515
Vium7017g00001 1010 FunFam Piriformospora indica-insensitive protein 2 205 295 - -
Vium7017g00001 1010 Pfam Protein kinase domain 721 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7017g00001 1010 ProSiteProfiles Protein kinase domain profile. 717 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7017g00001 1010 FunFam MDIS1-interacting receptor like kinase 2 796 993 - -
Vium7017g00001 1010 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515
Vium7017g00001 1010 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Vium7017g00001 1010 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7017g00001 Vium-Chr7017 2432 5689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7017g00001 51 889 Receptor kinase-like Gene Family AT4G08850 43.488 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium7017g00001 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7017g00001 - - gmx:100800924 1455.27