Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium700g00008 ATGCCTCATCACACCAAACCACGTAATCCTCTGTGTAATCTCAGGGACATGGGCATGATCACTGCACCCAAATATACAAACTTTCTTCTCCTTCTCTTCTTTCTCTGTTTTCATGCCTCGTTCTCTCATGCTGTCAATTCCCTGACAGGAGAGCAAGAAATCAGAGACAACAATGGTGATGACAACTTGGTGTCAGAAGACCTCAGCTTTCAAATGGGTTTCTTCGGTTTTGATAACTCTTCAAGGTACGTTGGGATTTGGTACCGCAAGTTTCCTAGTCCGGCTACGGCATTCATATGGGTAGCAAATAGAGAGAAACCCATCATGGGAAGAGGAGGTTCGATCAAAATCAAAGGTGACGGAAACTTGGTTGTTTTCGATGGAGAGAACAACGAGGTGTGGTCAACTAACAAGTCTATATCGACTAGAAACACAACAGCTGTTCTTGGTGATGACGGGAACCTTGTTCTTTCAGAAGAATCAGAACATGAGAAAAAGGTGTGGCAAAGCTTTGAGAATCCAACTGATACCTTCGTGCCGGGTATGTCTCTACCAATTAATGCTGGAACGAGTATGTTCAGGTCGTGGAAATCAGCAACGGATCCTTCACCGGGAAACTACTCAATGGGGGTTGACTCTGGGGGATCAACCATACAGATTTTGATTTTGGAAGGGGAAAAAAGGAGGTGGAGAACTGGGTACTGGGATGGTAGAGTATTCACTGGTGTCTCTAATATGACAGGAAGCTCTCTTTTTGGTTTTAAACTTAATGGGAATCATTTTACATATACATGGAATGAAACTGAAAAGGTGAGGTTTCAGATAACCTGGGATGGGTTTGAAAAGAAGTTTATATCGAATGAAGATGAGACACAATGGAATAATACACAACACGAGCCTTATAATAATTGTGAGCATTATAATTTTTGTGGCAATTTTGCAGTGTGTGATATCTCTAAGGCATCTGTTTGTAGTTGCTTGCACGGGTTTCAACAAGGGGAATTGAGTGAGTGGAATGATGGAAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAACTGAGGTTACTGTTGGTGATGATGGTTTCTCCGTTAAAAGATGTACAAAGTTGCCAGATTTTGCACGTCTGGAGAGTCCTTCTAACGATGAGGAATGCAAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACAATTGGAATTGGGTGCATGATTTGGTATGTGGACTTGGTCGATGTTCAACACACTGAAAATGATATTGGAAGTGTACTCAACATCCGTCTTGCTGATTCTGAGTTAGAAGCAAACGATGGAGAGAAAAAGTCCAAAACATGGATAATAATAATAATAATAACTGTTGTGGTGGGGCTCATCTGCCTTGGGATCTCTGTATTGCTGGTATGGAGGTTTAAGAGAAAACGTGAAGCTTCCCCGGCTTCGGCTAACAACATTGGTGAGTTTTCGATCATTGATCCAACGAGGAGTACAGATTTATCGACAGAATTTTCAGGATCAACTGACTTAGGTTTGGAAGGGAATAAGGCAGAGCTTCCATTCTTCACTTTGAGCTTCCTTGCAGCAGCAACAGACAATTTCTCCGAAAAAAATAAGCTGGGACAAGGGGGATTTGGTCCTGTATACAAGGGGAAGCTTCCAGGAGGAGAGGAAATAGCTGTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGATTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGACTGCTTGGATGTTCAATTCAAGGAGAAGAAAAAATGCTGGTATACGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCAGTGAAGAAAACACAACTAGACTGGACAAAGCGCTTTGAAATAATTGAAGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTTAAAGCAAGCAACATTTTATTAGATGAAAGCATGCATCCAAAAATTTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGCAAGCACAAACAGAGTGGTTGGTACATATGGCTATATGTCGCCGGAATATGCAATGGAAGGTCTCTTTTCAGTTAAATCTGACGTCTATAGTTTTGGTGTACTGCTACTAGAGATTATGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGAAGATTCAAGTCTCATAGGATATGCCTGGCACATGTGGAGTGAGCAGAGAGTAATGGAACTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATTCATACACATAGCAATGTTATGTGTGCAAGACTCAGCATCTCGCAGACCAAACATGGCCTCTGTATTGTTAATGCTGGCAAGTGAAGACACAACTCTTCCTCTGCCTAAACAACCTTTGGTCACTGCTTCCATGAGGAAATTTGATGATGGAGATCAATCTTATAGCGAAGGCCTTGACGTGTCAAACGATTTGACAGTTACAATGGTGACAGGGAGATAG 2583 0.417 MPHHTKPRNPLCNLRDMGMITAPKYTNFLLLLFFLCFHASFSHAVNSLTGEQEIRDNNGDDNLVSEDLSFQMGFFGFDNSSRYVGIWYRKFPSPATAFIWVANREKPIMGRGGSIKIKGDGNLVVFDGENNEVWSTNKSISTRNTTAVLGDDGNLVLSEESEHEKKVWQSFENPTDTFVPGMSLPINAGTSMFRSWKSATDPSPGNYSMGVDSGGSTIQILILEGEKRRWRTGYWDGRVFTGVSNMTGSSLFGFKLNGNHFTYTWNETEKVRFQITWDGFEKKFISNEDETQWNNTQHEPYNNCEHYNFCGNFAVCDISKASVCSCLHGFQQGELSEWNDGNSGGCKRRTPLKAERNSSGTEVTVGDDGFSVKRCTKLPDFARLESPSNDEECKRFCLQNSSCTAYSYTIGIGCMIWYVDLVDVQHTENDIGSVLNIRLADSELEANDGEKKSKTWIIIIIITVVVGLICLGISVLLVWRFKRKREASPASANNIGEFSIIDPTRSTDLSTEFSGSTDLGLEGNKAELPFFTLSFLAAATDNFSEKNKLGQGGFGPVYKGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKMLVYEYLPNKSLDCFLFDPVKKTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLKASNILLDESMHPKISDFGLARIFGGNQNEASTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTEDSSLIGYAWHMWSEQRVMELLDSSIGDSTPKSKALRFIHIAMLCVQDSASRRPNMASVLLMLASEDTTLPLPKQPLVTASMRKFDDGDQSYSEGLDVSNDLTVTMVTGR 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium700g00008 860 PIRSF SRK 18 860 IPR024171 GO:0004674
Vium700g00008 860 ProSiteProfiles Protein kinase domain profile. 543 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00008 860 Gene3D - 41 171 IPR036426 -
Vium700g00008 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 664 676 IPR008271 GO:0004672|GO:0006468
Vium700g00008 860 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 40 171 - -
Vium700g00008 860 Pfam S-locus glycoprotein domain 230 332 IPR000858 GO:0048544
Vium700g00008 860 Pfam D-mannose binding lectin 98 197 IPR001480 -
Vium700g00008 860 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 202 IPR036426 -
Vium700g00008 860 SMART blect_4 54 174 IPR001480 -
Vium700g00008 860 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 512 618 - -
Vium700g00008 860 ProSiteProfiles PAN/Apple domain profile. 365 440 IPR003609 -
Vium700g00008 860 SUPERFAMILY Protein kinase-like (PK-like) 527 837 IPR011009 -
Vium700g00008 860 SMART ntp_6 365 439 IPR003609 -
Vium700g00008 860 CDD B_lectin 63 174 IPR001480 -
Vium700g00008 860 SMART serkin_6 543 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00008 860 ProSiteProfiles Bulb-type lectin domain profile. 45 170 IPR001480 -
Vium700g00008 860 Pfam PAN-like domain 366 424 IPR003609 -
Vium700g00008 860 CDD PAN_AP_plant 367 440 - -
Vium700g00008 860 Coils Coil 859 860 - -
Vium700g00008 860 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 619 821 - -
Vium700g00008 860 Pfam Protein tyrosine and serine/threonine kinase 546 810 IPR001245 GO:0004672|GO:0006468
Vium700g00008 860 Gene3D Phosphorylase Kinase; domain 1 510 618 - -
Vium700g00008 860 CDD STKc_IRAK 549 813 - -
Vium700g00008 860 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 804 - -
Vium700g00008 860 Gene3D Transferase(Phosphotransferase) domain 1 619 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium700g00008 Vium-Chr700 105925 109975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium700g00008 531 855 Receptor kinase-like Gene Family AT4G11530 57.831 4.32e-129 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium700g00008 PK_Tyr_Ser-Thr 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium700g00008 - - vum:124821534 1732.23