Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium700g00004 ATGGGAGGTTCCACTGACCTCCTCACATTCTTCCTTTTATGTTTCTTCACCAGTTTTTTCACCCTCTTTCCCACACTTTCCATCTCCACAGATACCTTAACAAAATCCCAATCCCTCCAAACCAACCAAACCCTCCTCTCCCCCAGTGCAATTTTCGAGTTTGGTTTCTTTTCCTACACCAATTCCACCTGGTACTTGGCCATATGGTACAAAACCATCCACCATACAGATAAAACTGTGGTCTGGGTGGCAAATCGTGACACCCCACTTCAAAATTCCAACGCCTTTCTCAAAATAGACGACAAGGGAAACCTCATCATCGTAAATCAATCCCAAAAACCTGTCTGGTCCTCCAATCACACCACACCAATAATCAACCCAGTTCTTCAGCTCTTGGATTCCGGGAACCTGGTTCTTCGAGAAGAAAACGAGAATGACCCCACTAGGTTCCTCTGGCAGAGCTTCGATTACCCGACAGATACCTTGTTACCCGGCATGAAACTAGGTTGGAACTTCGATACGGGCATGGAGAAACACATAACCTCCTGGAGCACAAACGAAGACCCTTCAAGCGGGGATTTTTCCTTCAAGCTAGATTACCGTGGTCTGCCGGAAATATTCCTCTGGAACAAGGACCGGATAATCTACCGTAGTGGACCTTGGAATGGCGACAGATTCAGCGGGGTGCCCGAGATGCATCCCGTCACCGATTCCATTAAGTTCTCGTTCTTTGCGGATGACCACCAAGTATACTACACATTCTCTATTGCGAACCACTCCTTGTTCTCGAGACTCTCTGTGACCTCTTTCGGGGAACTCCAACGCCTTACGTGGATAGAAAGCACCCAGGTTTGGAACAAATTCTGGTACGCTCCCAAAGATCAATGCGACAACTACAGAGAGTGCGGTCCCTACGGAGTCTGCGACACGAACGAATCGCCGGTGTGTCAGTGCATCACAGGGTTCCGGCCTAGGAACCAGCAGGCGTGGAATTTGCGAGATGGGTCTGGTGGGTGTGTGAGGAAAACGGGATTGGCGTGTGGGAGTGACAGGTTTTTGCATATGCAGAATGTGAAGTTGCCTGATACAACGTCGGTGTTCGTGAACAGGAGCATGGGGCTGGTGGAGTGCGGGAATTTGTGCCAGAGGAATTGTTCGTGCACTGCTTATGCCAATATTGAGATTAGTAACGGAGGGAGTGGGTGCGTGATGTGGGTTGGGGAGCTCTTGGACGTCAGAAGCTACCCTTCTGGAGGGCAAGATCTTTATGTCAGATTGGCGGCTTCTGATATAGGGGTAGAAGGTGATTCTGGCAAGACAAGTAATACAGTAAAGGATATAGGCATTGTAGTTGGTGTTGCAGGTTTTGTAGTATTGGCATCTGGAATTTTTATCTTGTGGAAGAAGAGGAAATTGCAACGTGTATTGAAATGGAAGACAGAAAAAAGAGGTTTTTCGGAAAGAAGTCAGGATTTGTTAATGAATGAGGGAGTGTTATCAAGTAACAGAGAACAGTCCGGTGAAAGTAACATGGACGACCTAGAGTTGCCACTGTTTGATTTTAGCACCATAACAATGGCTACAAACAACTTCTCTGAAGAAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAAGGCAGGTTGAAGGAAGGTCAGCACATTGCTGTGAAGAGATTATCAAAAAATTCTGGCCAAGGAATTGAGGAGTTCAAGAATGAGGTCAAATTGATTGTCAAGCTTCAGCATCGAAATCTAGTTCGTTTGCTTGGTTGCAGCATTCAGATGGACGAGAAGATGCTGGTCTATGAGTACATGGAAAATAGAAGCCTTGATGCAATTTTGTTTGATAAGGCAAAAAAATCCTCACTTGACTGGCAAATGCGCTTCAACATTATATGTGGCATTGCCAGAGGGCTTCTGTATTTGCACCAAGATTCCAGATTTAGGATCATACACAGGGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAGATGAACCCAAAGATATCAGATTTTGGTATGGCTAGAATTTTTGGCACGGATCAGATAGAAGCAAATACGATGAGAATTGTTGGAACATATGGGTACATGTCCCCTGAATATGCTATGGATGGAGTCTTCTCAGTAAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTGCTGGAGATAGTAAGTGGAAAAAAGAACAGAGGATTCTATTTGGCCAACAAAGAATTGAATCTTCTAGGACATGCGTGGAAGTTGTGGATGGAAGGAAATGCATTGGAACTGAGTGATTCGTCTATTGACACATCATATTCAGCATCAGAAGTTCATAGATGCATACAAGTGGGTCTCTTATGCGTGCAAGAGCGTGCAGAAGACAGGCCAACGATGTCTTCAGTGGTGTTGATGCTGAGTAGTGATACTGCATCAATGTCACAACCCAAAAGCCCAGGGTTTTGTCTAGGAAGAAATCCTACGGAAACTGAATCTTCTTCAAGTAAACTAGAAGAATCATGCACTGTGAACCAAGTCACTGTCACAATGATAGATGCTAGGTAG 2553 0.4493 MGGSTDLLTFFLLCFFTSFFTLFPTLSISTDTLTKSQSLQTNQTLLSPSAIFEFGFFSYTNSTWYLAIWYKTIHHTDKTVVWVANRDTPLQNSNAFLKIDDKGNLIIVNQSQKPVWSSNHTTPIINPVLQLLDSGNLVLREENENDPTRFLWQSFDYPTDTLLPGMKLGWNFDTGMEKHITSWSTNEDPSSGDFSFKLDYRGLPEIFLWNKDRIIYRSGPWNGDRFSGVPEMHPVTDSIKFSFFADDHQVYYTFSIANHSLFSRLSVTSFGELQRLTWIESTQVWNKFWYAPKDQCDNYRECGPYGVCDTNESPVCQCITGFRPRNQQAWNLRDGSGGCVRKTGLACGSDRFLHMQNVKLPDTTSVFVNRSMGLVECGNLCQRNCSCTAYANIEISNGGSGCVMWVGELLDVRSYPSGGQDLYVRLAASDIGVEGDSGKTSNTVKDIGIVVGVAGFVVLASGIFILWKKRKLQRVLKWKTEKRGFSERSQDLLMNEGVLSSNREQSGESNMDDLELPLFDFSTITMATNNFSEENKLGQGGFGSVYKGRLKEGQHIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKAKKSSLDWQMRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQIEANTMRIVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVLEIVSGKKNRGFYLANKELNLLGHAWKLWMEGNALELSDSSIDTSYSASEVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMSQPKSPGFCLGRNPTETESSSSKLEESCTVNQVTVTMIDAR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium700g00004 850 SMART serkin_6 531 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00004 850 Pfam Receptor serine/threonine kinase 487 521 IPR022126 GO:0004674
Vium700g00004 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Vium700g00004 850 CDD STKc_IRAK 537 802 - -
Vium700g00004 850 CDD PAN_AP_plant 345 427 - -
Vium700g00004 850 SUPERFAMILY Protein kinase-like (PK-like) 516 827 IPR011009 -
Vium700g00004 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vium700g00004 850 Pfam PAN-like domain 347 412 IPR003609 -
Vium700g00004 850 Gene3D - 25 155 IPR036426 -
Vium700g00004 850 Gene3D Phosphorylase Kinase; domain 1 505 606 - -
Vium700g00004 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 810 - -
Vium700g00004 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 793 - -
Vium700g00004 850 Pfam Domain of unknown function (DUF3403) 804 850 IPR021820 GO:0004674
Vium700g00004 850 MobiDBLite consensus disorder prediction 812 834 - -
Vium700g00004 850 Pfam Protein tyrosine and serine/threonine kinase 534 800 IPR001245 GO:0004672|GO:0006468
Vium700g00004 850 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vium700g00004 850 SMART blect_4 36 158 IPR001480 -
Vium700g00004 850 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Vium700g00004 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
Vium700g00004 850 SMART ntp_6 347 426 IPR003609 -
Vium700g00004 850 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Vium700g00004 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 497 606 - -
Vium700g00004 850 ProSiteProfiles Protein kinase domain profile. 531 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00004 850 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vium700g00004 850 CDD B_lectin 36 158 IPR001480 -
Vium700g00004 850 Gene3D Transferase(Phosphotransferase) domain 1 607 814 - -
Vium700g00004 850 Pfam D-mannose binding lectin 79 183 IPR001480 -
Vium700g00004 850 PIRSF SRK 4 850 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium700g00004 Vium-Chr700 58188 64600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium700g00004 519 850 Receptor kinase-like Gene Family AT4G11530 59.292 2.44e-133 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium700g00004 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium700g00004 - - gmx:106799702 1440.25