Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium700g00003 ATGAACCAAACCCATAAGCATAAAATATGTATGCTAAGCTCCTTGATTCTACTCTTCACCTTCCATTTTTGTTCTTGTTCTGATACCATATCTTCTGACAAAGCCATCAGAGATGGCGAGCTTCTTGTTTCCAAAGGCAAAACCTTTGCTCTTGGGTTTTTCAGTCCAGGAAAATCCAAATCCCGCTATGTGGGAATATGGTTCAACAACGTTCAAGAACAAACTGTTGTTTGGGTTGCAAACAGAGACACTCCCATCAATGACACCTCTGGGGTTCTCTCAATCAACCCAGATGGAAACCTAGTCCTCCACCACAACTATAGCACTAGTCCCATTTGGTCTACCAGTGTTTCACTCACACAATCAAATAGCACTGCCACTTACGTCATAGCTCAACTCTCAGACCTAGCAAACCTTCTTCTGATTCTTAATGACACCAAAACTCTCATCTGGCAAAGCTTTGATCATCCCACAGACACCTTGATTCCATATCTAAGAATTGGTTTCGACAGAAAAGCTAACCAGAGTTGGATCCTCCAATCTTGGAAGACAGATGATGACCCCGGAACAGGTTCTTACACATTGGAACTGAGCAGCACTGGGAAGGCACAGTTGTTCTTGTATCACCAGAACCTTCCCCTGTGGCGAGGTGGATCATGGAACGGTGAATTATTTATGGGTGTACCCAACATGAAAAGAGATTTGCTTACTTTTAATGTTTCTTTTACTGAAAACGAAAACCTCGTAGCTCTCTCATTTAACCCGCGCGATAAGTCCTTGATCACTTGGGTGGTAGTCCAGCAATCAGGTTTCTTTAACGTATTCACTCGGGATAAGCAAAAGAATCAGTGGAACAGGTACTGGTCTGTGCCAATAAACCAATGTGATAACTATGGAACCTGTGGATCAAACGGTAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTACTTGTCTACCTGGGTTTGAACCCAAATCCTCACATGAGTGGTACAATAACAGAGATGGGTCAGAAGGGTGCGTGAGGAAGAAAGGTGTATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTAAAGCTGCCTGATACCTCTGAGGCAACTGCCAAAGAGGGTTGGAGTTTGGACGAGTGTGAGAAGGATTGCTTGAGAAACTGCTCTTGCACTGCTTATGCAGTTCTTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAATTTAACAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTGTTTGTCCGTGTTGATGCAGAAGAACTAGCAAATTATAACAAAAAGACAAAAGGATTACGCGGTAAAATGAGGATTGCTGTAATTGTGACTGCTTCTGCAGTAGCAAGTATCATTATCCTCTTCGCTCTGTATTTCCGGTGGAAGAAGAAAACCAAAGATAAAGTGATGCATCATTTAAACCAATTTTCCCCTGGACATGACAATGGTATCCAAAGCAGCACGCATAGAAATCTTCCGTTTTTCAGCCTTAAAGTGATAATGGAAGCCGCAAGAAATTTTAGTGATGAGAACAAGCTTGGGCAAGGTGGATTTGGTTCTGTCTACAAGGGCTGTCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCGGAACATTCAGGTCAAGGGACCGAAGAGTTTAAAACTGAAGTTACATTGTTAGTTAAACTTCAACACAGAAATCTAGTGAGGCTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTCTTCATATTCGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGGTTTGAAATCATTTTGGGGATTGCTCGAGGTATTCTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCAAGCAATGTACTCCTTGATGCTGCAATGAATCCCAAGATCTCAGATTTCGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGGACGAGAAGAGTAGTCGGAACATATGGCTATATGGCACCAGAATATGCCATGGATGGACGGTATTCAACAAAATCTGACGTCTTTAGTTTCGGGGTCTTACTCCTGGAGATTATTGCTGGCAAGAGAAATACAGACTGTGAAAGGGGAAGATCCTCCCGAAATTTAATTGGACATGTTTGGATACTGTGGACAGAAGGAAGGGCGTTGGATATAGTTGATTCAACACTGGGTGAGTCTTATTCTCCAGCTTTTGTTCTGAGGTGCATTCAGATTGGTCTATTGTGCGTGCAAGAAAATGCAGCGTATAGACCTTCATTGTCAGAAGTTGTTTTCATGCTAGGCAACGAAACAAGTCTTTCCCGTCCCCAAAAGCCAGCATTTTTACTGAATGGAGATTTGGCCGAGTCATCAACATCAGGTGGTGGATCTTCAATAAATGAAATAACAGCAACTACTGTGAGTGCTCGTTAG 2502 0.4205 MNQTHKHKICMLSSLILLFTFHFCSCSDTISSDKAIRDGELLVSKGKTFALGFFSPGKSKSRYVGIWFNNVQEQTVVWVANRDTPINDTSGVLSINPDGNLVLHHNYSTSPIWSTSVSLTQSNSTATYVIAQLSDLANLLLILNDTKTLIWQSFDHPTDTLIPYLRIGFDRKANQSWILQSWKTDDDPGTGSYTLELSSTGKAQLFLYHQNLPLWRGGSWNGELFMGVPNMKRDLLTFNVSFTENENLVALSFNPRDKSLITWVVVQQSGFFNVFTRDKQKNQWNRYWSVPINQCDNYGTCGSNGNCDPLNFEEFRCTCLPGFEPKSSHEWYNNRDGSEGCVRKKGVSVCGNGEGFVKLEGLKLPDTSEATAKEGWSLDECEKDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLTDIQKLSDQGQDLFVRVDAEELANYNKKTKGLRGKMRIAVIVTASAVASIIILFALYFRWKKKTKDKVMHHLNQFSPGHDNGIQSSTHRNLPFFSLKVIMEAARNFSDENKLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGILYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTRRVVGTYGYMAPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDCERGRSSRNLIGHVWILWTEGRALDIVDSTLGESYSPAFVLRCIQIGLLCVQENAAYRPSLSEVVFMLGNETSLSRPQKPAFLLNGDLAESSTSGGGSSINEITATTVSAR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium700g00003 833 CDD B_lectin 36 157 IPR001480 -
Vium700g00003 833 CDD STKc_IRAK 525 790 - -
Vium700g00003 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Vium700g00003 833 CDD EGF_CA 292 327 - -
Vium700g00003 833 MobiDBLite consensus disorder prediction 811 833 - -
Vium700g00003 833 Gene3D Phosphorylase Kinase; domain 1 481 594 - -
Vium700g00003 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 154 - -
Vium700g00003 833 ProSiteProfiles EGF-like domain profile. 291 329 IPR000742 -
Vium700g00003 833 SMART serkin_6 519 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00003 833 ProSiteProfiles Bulb-type lectin domain profile. 27 154 IPR001480 -
Vium700g00003 833 Gene3D Hepatocyte Growth Factor 348 428 - -
Vium700g00003 833 Pfam PAN-like domain 350 416 IPR003609 -
Vium700g00003 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 782 - -
Vium700g00003 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 798 - -
Vium700g00003 833 ProSiteProfiles PAN/Apple domain profile. 350 431 IPR003609 -
Vium700g00003 833 SMART blect_4 33 157 IPR001480 -
Vium700g00003 833 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Vium700g00003 833 CDD PAN_AP_plant 351 430 - -
Vium700g00003 833 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium700g00003 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 188 IPR036426 -
Vium700g00003 833 SUPERFAMILY Protein kinase-like (PK-like) 501 802 IPR011009 -
Vium700g00003 833 SMART ntp_6 351 430 IPR003609 -
Vium700g00003 833 Pfam S-locus glycoprotein domain 215 327 IPR000858 GO:0048544
Vium700g00003 833 Gene3D - 22 155 IPR036426 -
Vium700g00003 833 Pfam D-mannose binding lectin 75 183 IPR001480 -
Vium700g00003 833 Pfam Protein tyrosine and serine/threonine kinase 522 720 IPR001245 GO:0004672|GO:0006468
Vium700g00003 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vium700g00003 833 Gene3D Transferase(Phosphotransferase) domain 1 595 801 - -
Vium700g00003 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium700g00003 Vium-Chr700 42960 46947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium700g00003 507 833 Receptor kinase-like Gene Family AT4G11530 57.270 6.47e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium700g00003 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium700g00003 - - tpra:123914661 1220.3